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LRIG1 leucine rich repeats and immunoglobulin like domains 1 [ Gallus gallus (chicken) ]

Gene ID: 427592, updated on 5-Mar-2024

Summary

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Symbol
LRIG1provided by CGNC
Full Name
leucine rich repeats and immunoglobulin like domains 1provided by CGNC
Primary source
CGNC:5644
See related
Ensembl:ENSGALG00010019323
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (14629825..14710908, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (14663360..14744485, complement)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112533375 Neighboring gene uncharacterized LOC124417162 Neighboring gene membrane associated guanylate kinase, WW and PDZ domain containing 1 Neighboring gene solute carrier family 25 member 26 Neighboring gene uncharacterized LOC124417173 Neighboring gene uncharacterized LOC107054416 Neighboring gene monocarboxylate transporter 2-like Neighboring gene kelch repeat and BTB domain containing 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeats and immunoglobulin-like domains protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    14629825..14710908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_425165.8 → XP_425165.6  leucine-rich repeats and immunoglobulin-like domains protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z9G8
    Conserved Domains (6) summary
    smart00082
    Location:567 → 615
    LRRCT; Leucine rich repeat C-terminal domain
    smart00409
    Location:825 → 905
    IG; Immunoglobulin
    smart00410
    Location:626 → 720
    IG_like; Immunoglobulin like
    sd00031
    Location:175 → 192
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:242 → 265
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:195 → 567
    internalin_A; class 1 internalin InlA

  2. XM_015293263.4 → XP_015148749.2  leucine-rich repeats and immunoglobulin-like domains protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z9G8
    Related
    ENSGALP00010027828.1, ENSGALT00010046731.1
    Conserved Domains (6) summary
    smart00082
    Location:567 → 615
    LRRCT; Leucine rich repeat C-terminal domain
    smart00409
    Location:825 → 905
    IG; Immunoglobulin
    smart00410
    Location:626 → 720
    IG_like; Immunoglobulin like
    sd00031
    Location:175 → 192
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:242 → 265
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:195 → 567
    internalin_A; class 1 internalin InlA

  3. XM_040646582.2 → XP_040502516.1  leucine-rich repeats and immunoglobulin-like domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z9G8
    Conserved Domains (6) summary
    smart00082
    Location:439 → 487
    LRRCT; Leucine rich repeat C-terminal domain
    smart00409
    Location:602 → 686
    IG; Immunoglobulin
    smart00410
    Location:697 → 777
    IG_like; Immunoglobulin like
    sd00033
    Location:114 → 137
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:71 → 439
    internalin_A; class 1 internalin InlA
    cd00096
    Location:707 → 711
    Ig; Ig strand B [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    14663360..14744485 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040681905.2 → XP_040537839.1  leucine-rich repeats and immunoglobulin-like domains protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0Z9G8
    Conserved Domains (5) summary
    smart00082
    Location:545 → 593
    LRRCT; Leucine rich repeat C-terminal domain
    smart00409
    Location:803 → 883
    IG; Immunoglobulin
    sd00031
    Location:153 → 170
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:220 → 243
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:173 → 545
    internalin_A; class 1 internalin InlA

  2. XM_040681904.2 → XP_040537838.1  leucine-rich repeats and immunoglobulin-like domains protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0Z9G8
    Conserved Domains (6) summary
    smart00082
    Location:545 → 593
    LRRCT; Leucine rich repeat C-terminal domain
    smart00409
    Location:803 → 883
    IG; Immunoglobulin
    smart00410
    Location:604 → 698
    IG_like; Immunoglobulin like
    sd00031
    Location:153 → 170
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:220 → 243
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:173 → 545
    internalin_A; class 1 internalin InlA

  3. XM_040681906.2 → XP_040537840.1  leucine-rich repeats and immunoglobulin-like domains protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z9G8
    Conserved Domains (6) summary
    smart00082
    Location:439 → 487
    LRRCT; Leucine rich repeat C-terminal domain
    smart00409
    Location:602 → 686
    IG; Immunoglobulin
    smart00410
    Location:697 → 777
    IG_like; Immunoglobulin like
    sd00033
    Location:114 → 137
    LRR_RI; leucine-rich repeat [structural motif]
    NF033189
    Location:71 → 439
    internalin_A; class 1 internalin InlA
    cd00096
    Location:707 → 711
    Ig; Ig strand B [structural motif]
Nucleotide Protein
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