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PCASP1 paracaspase 1 [ Gallus gallus (chicken) ]

Gene ID: 426852, updated on 17-Aug-2024
Symbol
PCASP1provided by CGNC
Full Name
paracaspase 1provided by CGNC
Primary source
CGNC:52913
See related
Ensembl:ENSGALG00010010352
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
MALT1
Orthologs
human mouse all
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See PCASP1 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
17
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (1137316..1170576)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (1137316..1170576)

Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124417505 Neighboring gene microRNA 122-1 Neighboring gene microRNA mir-12294 Neighboring gene alpha kinase 2 Neighboring gene zinc finger protein 532 Neighboring gene uncharacterized LOC124417504 Neighboring gene SEC11 homolog C, signal peptidase complex subunit

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. IkappaB kinase beta-induced phosphorylation of CARMA1 contributes to CARMA1 Bcl10 MALT1 complex formation in B cells. Shinohara H, et al. J Exp Med, 2007 Dec 24. PMID 18086859, Free PMC Article
  2. MALT1 is not alone after all: identification of novel paracaspases. Hulpiau P, et al. Cell Mol Life Sci, 2016 Mar. PMID 26377317, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
mucosa-associated lymphoid tissue lymphoma translocation protein 1
Names
mucosa associated lymphoid tissue lymphoma translocation gene 1

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    1137316..1170576
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004949002.5 → XP_004949059.4  mucosa-associated lymphoid tissue lymphoma translocation protein 1 isoform X1

    Conserved Domains (5) summary
    smart00408
    Location:225 → 278
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:117 → 192
    IG; Immunoglobulin
    COG4249
    Location:328 → 558
    COG4249; Uncharacterized protein, contains caspase domain [General function prediction only]
    cd08783
    Location:14 → 110
    Death_MALT1; Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1
    cd00096
    Location:219 → 223
    Ig; Ig strand A' [structural motif]

  2. XM_003642904.6 → XP_003642952.5  mucosa-associated lymphoid tissue lymphoma translocation protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A1D5P1T2
    Related
    ENSGALP00010014039.1, ENSGALT00010024758.1
    Conserved Domains (5) summary
    smart00408
    Location:225 → 278
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:117 → 192
    IG; Immunoglobulin
    COG4249
    Location:327 → 557
    COG4249; Uncharacterized protein, contains caspase domain [General function prediction only]
    cd08783
    Location:14 → 110
    Death_MALT1; Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1
    cd00096
    Location:219 → 223
    Ig; Ig strand A' [structural motif]

  3. XM_004949003.5 → XP_004949060.4  mucosa-associated lymphoid tissue lymphoma translocation protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y0F6
    Related
    ENSGALP00010014036.1, ENSGALT00010024751.1
    Conserved Domains (5) summary
    smart00408
    Location:225 → 278
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:117 → 192
    IG; Immunoglobulin
    COG4249
    Location:317 → 547
    COG4249; Uncharacterized protein, contains caspase domain [General function prediction only]
    cd08783
    Location:14 → 110
    Death_MALT1; Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1
    cd00096
    Location:219 → 223
    Ig; Ig strand A' [structural motif]

  4. XM_004949004.5 → XP_004949061.4  mucosa-associated lymphoid tissue lymphoma translocation protein 1 isoform X4

    Conserved Domains (5) summary
    smart00408
    Location:225 → 278
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:117 → 192
    IG; Immunoglobulin
    COG4249
    Location:316 → 546
    COG4249; Uncharacterized protein, contains caspase domain [General function prediction only]
    cd08783
    Location:14 → 110
    Death_MALT1; Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1
    cd00096
    Location:219 → 223
    Ig; Ig strand A' [structural motif]

  5. XM_025144928.3 → XP_025000696.2  mucosa-associated lymphoid tissue lymphoma translocation protein 1 isoform X5

    Conserved Domains (4) summary
    smart00408
    Location:225 → 278
    IGc2; Immunoglobulin C-2 Type
    smart00409
    Location:117 → 192
    IG; Immunoglobulin
    cd08783
    Location:14 → 110
    Death_MALT1; Death domain similar to that found in Mucosa-associated lymphoid tissue-lymphoma-translocation gene 1
    cd00096
    Location:219 → 223
    Ig; Ig strand A' [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1137316..1170576
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046937378.1 → XP_046793334.1  mucosa-associated lymphoid tissue lymphoma translocation protein 1 isoform X1

  2. XM_046937379.1 → XP_046793335.1  mucosa-associated lymphoid tissue lymphoma translocation protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A1D5P1T2

  3. XM_046937380.1 → XP_046793336.1  mucosa-associated lymphoid tissue lymphoma translocation protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y0F6

  4. XM_046937381.1 → XP_046793337.1  mucosa-associated lymphoid tissue lymphoma translocation protein 1 isoform X4

  5. XM_046937382.1 → XP_046793338.1  mucosa-associated lymphoid tissue lymphoma translocation protein 1 isoform X5

Nucleotide Protein Strain
Heading Accession and Version

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