U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LSM1 LSM1 homolog, mRNA degradation associated [ Gallus gallus (chicken) ]

Gene ID: 426775, updated on 3-Dec-2024
Official Symbol
LSM1provided by CGNC
Official Full Name
LSM1 homolog, mRNA degradation associatedprovided by CGNC
Primary source
CGNC:2356
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table
See LSM1 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
4
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 22 NC_052553.1 (2441890..2443236, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 22 NC_052594.1 (2489230..2490576, complement)

Chromosome 22 - NC_052553.1Genomic Context describing neighboring genes Neighboring gene nodal growth differentiation factor Neighboring gene ASH2 like histone lysine methyltransferase complex subunit Neighboring gene steroidogenic acute regulatory protein Neighboring gene uncharacterized LOC121107412 Neighboring gene BAG cochaperone 4 Neighboring gene DDHD domain containing 2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA cap binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
U6 snRNA-associated Sm-like protein LSm1
Names
LSM1 homolog, U6 small nuclear RNA associated

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052553.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2441890..2443236 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_424387.8 → XP_424387.7  U6 snRNA-associated Sm-like protein LSm1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YWM1

  2. XM_046903413.1 → XP_046759369.1  U6 snRNA-associated Sm-like protein LSm1 isoform X1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052594.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2489230..2490576 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040689363.2 → XP_040545297.2  U6 snRNA-associated Sm-like protein LSm1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YWM1

  2. XM_046931700.1 → XP_046787656.1  U6 snRNA-associated Sm-like protein LSm1 isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials