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ATP13A1 ATPase 13A1 [ Gallus gallus (chicken) ]

Gene ID: 426090, updated on 17-Aug-2024
Symbol
ATP13A1provided by CGNC
Full Name
ATPase 13A1provided by CGNC
Primary source
CGNC:10108
See related
Ensembl:ENSGALG00010002581
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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See ATP13A1 in Genome Data Viewer
Location:
chromosome: 30
Exon count:
26
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 30 NC_052561.1 (498076..511307, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 30 NC_052602.1 (61771..75001, complement)

Chromosome 30 - NC_052561.1Genomic Context describing neighboring genes Neighboring gene PBX homeobox 4 Neighboring gene DSN1 homolog, MIS12 kinetochore complex component Neighboring gene multivesicular body subunit 12A Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 5 Neighboring gene LIM homeobox transcription factor 1-alpha-like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type ion transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables membrane protein dislocase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extraction of mislocalized protein from ER membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
manganese-transporting ATPase 13A1; endoplasmic reticulum transmembrane helix translocase
Names
ATPase type 13A1
XP_004950881.3
XP_004950882.3
XP_004950884.3
XP_040549001.1
XP_040549002.1
XP_040549003.1
XP_040549004.1
XP_423767.6

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052561.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    498076..511307 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_423767.8 → XP_423767.6  endoplasmic reticulum transmembrane helix translocase isoform X4

    UniProtKB/TrEMBL
    A0A8V0XGA8
    Related
    ENSGALP00010003692.1, ENSGALT00010005934.1
    Conserved Domains (1) summary
    cd07543
    Location:189 → 1116
    P-type_ATPase_cation; P-type cation-transporting ATPases, similar to human cation-transporting ATPase type 13A1 (ATP13A1) and Saccharomyces manganese-transporting ATPase 1 Spf1p

  2. XM_004950827.5 → XP_004950884.3  endoplasmic reticulum transmembrane helix translocase isoform X3

    UniProtKB/TrEMBL
    A0A8V0XGA8
    Related
    ENSGALP00010003690.1, ENSGALT00010005930.1
    Conserved Domains (1) summary
    cd07543
    Location:189 → 1121
    P-type_ATPase_cation; P-type cation-transporting ATPases, similar to human cation-transporting ATPase type 13A1 (ATP13A1) and Saccharomyces manganese-transporting ATPase 1 Spf1p

  3. XM_004950825.5 → XP_004950882.3  endoplasmic reticulum transmembrane helix translocase isoform X2

    UniProtKB/TrEMBL
    A0A8V0XGA8
    Conserved Domains (1) summary
    cd07543
    Location:189 → 1191
    P-type_ATPase_cation; P-type cation-transporting ATPases, similar to human cation-transporting ATPase type 13A1 (ATP13A1) and Saccharomyces manganese-transporting ATPase 1 Spf1p

  4. XM_004950824.5 → XP_004950881.3  endoplasmic reticulum transmembrane helix translocase isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGA8
    Conserved Domains (1) summary
    cd07543
    Location:189 → 1196
    P-type_ATPase_cation; P-type cation-transporting ATPases, similar to human cation-transporting ATPase type 13A1 (ATP13A1) and Saccharomyces manganese-transporting ATPase 1 Spf1p

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052602.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    61771..75001 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040693070.2 → XP_040549004.1  endoplasmic reticulum transmembrane helix translocase isoform X4

    UniProtKB/TrEMBL
    A0A8V0XGA8
    Conserved Domains (1) summary
    cd07543
    Location:189 → 1116
    P-type_ATPase_cation; P-type cation-transporting ATPases, similar to human cation-transporting ATPase type 13A1 (ATP13A1) and Saccharomyces manganese-transporting ATPase 1 Spf1p

  2. XM_040693069.2 → XP_040549003.1  endoplasmic reticulum transmembrane helix translocase isoform X3

    UniProtKB/TrEMBL
    A0A8V0XGA8
    Conserved Domains (1) summary
    cd07543
    Location:189 → 1121
    P-type_ATPase_cation; P-type cation-transporting ATPases, similar to human cation-transporting ATPase type 13A1 (ATP13A1) and Saccharomyces manganese-transporting ATPase 1 Spf1p

  3. XM_040693068.2 → XP_040549002.1  endoplasmic reticulum transmembrane helix translocase isoform X2

    UniProtKB/TrEMBL
    A0A8V0XGA8
    Conserved Domains (1) summary
    cd07543
    Location:189 → 1191
    P-type_ATPase_cation; P-type cation-transporting ATPases, similar to human cation-transporting ATPase type 13A1 (ATP13A1) and Saccharomyces manganese-transporting ATPase 1 Spf1p

  4. XM_040693067.2 → XP_040549001.1  endoplasmic reticulum transmembrane helix translocase isoform X1

    UniProtKB/TrEMBL
    A0A8V0XGA8
    Conserved Domains (1) summary
    cd07543
    Location:189 → 1196
    P-type_ATPase_cation; P-type cation-transporting ATPases, similar to human cation-transporting ATPase type 13A1 (ATP13A1) and Saccharomyces manganese-transporting ATPase 1 Spf1p
Nucleotide Protein Strain
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