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FDPS farnesyl diphosphate synthase [ Gallus gallus (chicken) ]

Gene ID: 425061, updated on 19-May-2023

Summary

Official Symbol
FDPSprovided by CGNC
Official Full Name
farnesyl diphosphate synthaseprovided by CGNC
Primary source
CGNC:23240
See related
Ensembl:ENSGALG00010028374
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
FPS
Orthologs
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Genomic context

See FDPS in Genome Data Viewer
Location:
chromosome: 25
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 25 NC_052556.1 (2115433..2119023)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 25 NC_052597.1 (2249439..2252973)

Chromosome 25 - NC_052556.1Genomic Context describing neighboring genes Neighboring gene CDC like kinase 2 Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 3 Neighboring gene RUN and SH3 domain containing 1 Neighboring gene microRNA 1629

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables dimethylallyltranstransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables geranyltranstransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
involved_in farnesyl diphosphate biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in farnesyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
involved_in geranyl diphosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
farnesyl pyrophosphate synthase
Names
(2E,6E)-farnesyl diphosphate synthase
FPP synthase
dimethylallyltranstransferase
farnesyl pyrophosphate synthetase, dimethylallyltranstransferase, geranyltranstransferase
geranyltranstransferase
NP_001383530.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396601.1NP_001383530.1  farnesyl pyrophosphate synthase

    Status: VALIDATED

    Source sequence(s)
    BI390205, BU110081, BU212908, BU475387, BU481841, CD218484
    UniProtKB/TrEMBL
    A0A8V1AK88
    Related
    ENSGALP00010042234.1, ENSGALT00010068744.1
    Conserved Domains (1) summary
    cd00685
    Location:41352
    Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052556.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2115433..2119023
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052597.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2249439..2252973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)