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TNN tenascin N [ Gallus gallus (chicken) ]

Gene ID: 424435, updated on 3-Apr-2024

Summary

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Symbol
TNNprovided by CGNC
Full Name
tenascin Nprovided by CGNC
Primary source
CGNC:3355
See related
Ensembl:ENSGALG00010011095
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
TNW; tenascin-N
Orthologs
human mouse all
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Genomic context

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See TNN in Genome Data Viewer
Location:
chromosome: 8
Exon count:
18
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 8 NC_052539.1 (7073638..7097679, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 8 NC_052580.1 (7085130..7109222, complement)

Chromosome 8 - NC_052539.1Genomic Context describing neighboring genes Neighboring gene tenascin R Neighboring gene KIAA0040 Neighboring gene mitochondrial ribosomal protein S14 Neighboring gene RAB GTPase activating protein 1 like Neighboring gene calcyclin binding protein Neighboring gene G protein-coupled receptor 52

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extracellular matrix alterations, accelerated leukocyte infiltration and enhanced axonal sprouting after spinal cord hemisection in tenascin-C-deficient mice. Schreiber J, et al. Acta Histochem, 2013 Oct. PMID 23701962
  2. Effects of tenascin-W on osteoblasts in vitro. Meloty-Kapella CV, et al. Cell Tissue Res, 2008 Dec. PMID 18985388
  3. Avian tenascin-W: expression in smooth muscle and bone, and effects on calvarial cell spreading and adhesion in vitro. Meloty-Kapella CV, et al. Dev Dyn, 2006 Jun. PMID 16534782

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The lack of tenascin-C alters the inflammatory reaction and extracellular matrix composition in a way that penetration of axonal fibers into spinal cord scar tissue may be facilitated.
    Title: Extracellular matrix alterations, accelerated leukocyte infiltration and enhanced axonal sprouting after spinal cord hemisection in tenascin-C-deficient mice.
  2. Tenascin-W can accelerate the formation of new bone in a complex multicellular environment.
    Title: Effects of tenascin-W on osteoblasts in vitro.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tenascin-N
Names
tenascin-W

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052539.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    7073638..7097679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040705263.2 → XP_040561197.1  tenascin-N isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y9P7, A0A8V0YBW7, A0A8V0YGK8
    Related
    ENSGALP00010015128.1, ENSGALT00010026554.1
    Conserved Domains (5) summary
    smart00060
    Location:798 → 874
    FN3; Fibronectin type 3 domain
    cd00063
    Location:266 → 345
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00087
    Location:889 → 1100
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam09064
    Location:230 → 256
    Tme5_EGF_like; Thrombomodulin like fifth domain, EGF-like
    pfam18720
    Location:171 → 198
    EGF_Tenascin; Tenascin EGF domain

  2. XM_040705264.2 → XP_040561198.1  tenascin-N isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y9P7, A0A8V0YBW7, A0A8V0YGK8
    Conserved Domains (5) summary
    smart00060
    Location:798 → 874
    FN3; Fibronectin type 3 domain
    cd00063
    Location:266 → 345
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00087
    Location:889 → 1100
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam09064
    Location:230 → 256
    Tme5_EGF_like; Thrombomodulin like fifth domain, EGF-like
    pfam18720
    Location:171 → 198
    EGF_Tenascin; Tenascin EGF domain

  3. XM_046898259.1 → XP_046754215.1  tenascin-N isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y9P7

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052580.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    7085130..7109222 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040677516.2 → XP_040533450.1  tenascin-N isoform X1

    UniProtKB/TrEMBL
    A0A8V0YBW7
    Conserved Domains (5) summary
    smart00060
    Location:798 → 874
    FN3; Fibronectin type 3 domain
    cd00063
    Location:266 → 345
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00087
    Location:889 → 1100
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam09064
    Location:230 → 256
    Tme5_EGF_like; Thrombomodulin like fifth domain, EGF-like
    pfam18720
    Location:171 → 198
    EGF_Tenascin; Tenascin EGF domain

  2. XM_040677517.2 → XP_040533451.1  tenascin-N isoform X1

    UniProtKB/TrEMBL
    A0A8V0YBW7
    Conserved Domains (5) summary
    smart00060
    Location:798 → 874
    FN3; Fibronectin type 3 domain
    cd00063
    Location:266 → 345
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00087
    Location:889 → 1100
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam09064
    Location:230 → 256
    Tme5_EGF_like; Thrombomodulin like fifth domain, EGF-like
    pfam18720
    Location:171 → 198
    EGF_Tenascin; Tenascin EGF domain

  3. XM_046923465.1 → XP_046779421.1  tenascin-N isoform X1

  4. XM_040677518.2 → XP_040533452.1  tenascin-N isoform X2

    UniProtKB/TrEMBL
    A0A8V0YBW7
    Conserved Domains (5) summary
    smart00060
    Location:798 → 874
    FN3; Fibronectin type 3 domain
    cd00063
    Location:266 → 345
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00087
    Location:889 → 1069
    FReD; Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular ...
    pfam09064
    Location:230 → 256
    Tme5_EGF_like; Thrombomodulin like fifth domain, EGF-like
    pfam18720
    Location:171 → 198
    EGF_Tenascin; Tenascin EGF domain

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001039685.1: Suppressed sequence

    Description
    NM_001039685.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from laboratory mouse: Tnn (GeneID:329278).
Nucleotide Protein
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