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COL5A2 collagen type V alpha 2 chain [ Gallus gallus (chicken) ]

Gene ID: 423986, updated on 10-Sep-2021

Summary

Official Symbol
COL5A2provided by CGNC
Official Full Name
collagen type V alpha 2 chainprovided by CGNC
Primary source
CGNC:1798
See related
Ensembl:ENSGALG00000031112
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
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Genomic context

See COL5A2 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
54
Annotation release Status Assembly Chr Location
105 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (557813..664771)
105 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.1) 7 NC_052579.1 (496075..603154)
104 previous assembly GRCg6a (GCF_000002315.5) 7 NC_006094.5 (421873..611515)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 7 NC_006094.4 (410676..577256)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112532754 Neighboring gene WD repeat domain 75 Neighboring gene uncharacterized LOC121111311 Neighboring gene collagen type III alpha 1 chain Neighboring gene uncharacterized LOC121111310

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
collagen alpha-2(V) chain; LOW QUALITY PROTEIN: collagen alpha-2(V) chain
Names
alpha 2 type V collagen
collagen, type V, alpha 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    557813..664771
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004942396.3XP_004942453.2  LOW QUALITY PROTEIN: collagen alpha-2(V) chain

    Conserved Domains (4) summary
    smart00038
    Location:12671496
    COLFI; Fibrillar collagens C-terminal domain
    smart00214
    Location:4398
    VWC; von Willebrand factor (vWF) type C domain
    PRK07764
    Location:368568
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:10001148
    PRK12678; transcription termination factor Rho; Provisional

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    496075..603154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040676438.1XP_040532372.1  LOW QUALITY PROTEIN: collagen alpha-2(V) chain

    Conserved Domains (4) summary
    smart00038
    Location:12671496
    COLFI; Fibrillar collagens C-terminal domain
    smart00214
    Location:4398
    VWC; von Willebrand factor (vWF) type C domain
    PRK07764
    Location:368568
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    PRK12678
    Location:10001148
    PRK12678; transcription termination factor Rho; Provisional
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