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SEC23IP SEC23 interacting protein [ Gallus gallus (chicken) ]

Gene ID: 423934, updated on 17-Aug-2024

Summary

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Symbol
SEC23IPprovided by CGNC
Full Name
SEC23 interacting proteinprovided by CGNC
Primary source
CGNC:7197
See related
Ensembl:ENSGALG00010002396
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See SEC23IP in Genome Data Viewer
Location:
chromosome: 6
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (31153898..31173869)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (31043770..31063695)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101749597 Neighboring gene inositol polyphosphate-5-phosphatase F Neighboring gene minichromosome maintenance complex binding protein Neighboring gene uncharacterized LOC112532701 Neighboring gene phospholipid phosphatase 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SEC23-interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    31153898..31173869
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_421794.8 → XP_421794.5  SEC23-interacting protein

    UniProtKB/TrEMBL
    A0A8V0X5L2, A0A8V0XG70
    Related
    ENSGALP00010003343.1, ENSGALT00010005504.1
    Conserved Domains (2) summary
    cd09584
    Location:750 → 815
    SAM_sec23ip; SAM domain of sec23ip
    PRK10263
    Location:212 → 416
    PRK10263; DNA translocase FtsK; Provisional

  2. XM_004942325.5 → XP_004942382.2  SEC23-interacting protein

    UniProtKB/TrEMBL
    A0A8V0X5L2, A0A8V0XG70
    Related
    ENSGALP00010003342.1, ENSGALT00010005503.1
    Conserved Domains (2) summary
    cd09584
    Location:750 → 815
    SAM_sec23ip; SAM domain of sec23ip
    PRK10263
    Location:212 → 416
    PRK10263; DNA translocase FtsK; Provisional

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    31043770..31063695
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040674861.2 → XP_040530795.1  SEC23-interacting protein

    UniProtKB/TrEMBL
    A0A8V0X5L2
    Conserved Domains (2) summary
    cd09584
    Location:751 → 816
    SAM_sec23ip; SAM domain of sec23ip
    PRK10263
    Location:213 → 417
    PRK10263; DNA translocase FtsK; Provisional

  2. XM_040674860.2 → XP_040530794.1  SEC23-interacting protein

    UniProtKB/TrEMBL
    A0A8V0X5L2
    Conserved Domains (2) summary
    cd09584
    Location:751 → 816
    SAM_sec23ip; SAM domain of sec23ip
    PRK10263
    Location:213 → 417
    PRK10263; DNA translocase FtsK; Provisional
Nucleotide Protein Strain
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