Format

Send to:

Choose Destination

BTRC beta-transducin repeat containing E3 ubiquitin protein ligase [ Gallus gallus (chicken) ]

Gene ID: 423854, updated on 14-Feb-2019

Summary

Symbol
BTRCprovided by CGNC
Full Name
beta-transducin repeat containing E3 ubiquitin protein ligaseprovided by CGNC
Primary source
CGNC:5914
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs

Genomic context

See BTRC in Genome Data Viewer
Location:
chromosome: 6
Exon count:
19
Annotation release Status Assembly Chr Location
104 current GRCg6a (GCF_000002315.5) 6 NC_006093.5 (23789857..23907913, complement)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 6 NC_006093.4 (22825821..22943749, complement)
102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 6 NC_006093.3 (22373571..22491520, complement)

Chromosome 6 - NC_006093.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053695 Neighboring gene solute carrier family 2, facilitated glucose transporter member 9-like Neighboring gene uncharacterized LOC107053713 Neighboring gene uncharacterized LOC107053694

Genomic regions, transcripts, and products

Pathways from BioSystems

  • Hedgehog signaling pathway, organism-specific biosystem (from KEGG)
    Hedgehog signaling pathway, organism-specific biosystemThe Hedgehog (Hh) signaling pathway has numerous roles in the control of cell proliferation, tissue patterning, stem cell maintenance and development. The primary cilium is an important center for tr...
  • Hedgehog signaling pathway, conserved biosystem (from KEGG)
    Hedgehog signaling pathway, conserved biosystemThe Hedgehog (Hh) signaling pathway has numerous roles in the control of cell proliferation, tissue patterning, stem cell maintenance and development. The primary cilium is an important center for tr...
  • Oocyte meiosis, organism-specific biosystem (from KEGG)
    Oocyte meiosis, organism-specific biosystemDuring meiosis, a single round of DNA replication is followed by two rounds of chromosome segregation, called meiosis I and meiosis II. At meiosis I, homologous chromosomes recombine and then segrega...
  • Oocyte meiosis, conserved biosystem (from KEGG)
    Oocyte meiosis, conserved biosystemDuring meiosis, a single round of DNA replication is followed by two rounds of chromosome segregation, called meiosis I and meiosis II. At meiosis I, homologous chromosomes recombine and then segrega...
  • SCF-BTRC complex, organism-specific biosystem (from KEGG)
    SCF-BTRC complex, organism-specific biosystemStructural complex; Genetic information processing; Ubiquitin system
  • SCF-BTRC complex, conserved biosystem (from KEGG)
    SCF-BTRC complex, conserved biosystemStructural complex; Genetic information processing; Ubiquitin system
  • Ubiquitin mediated proteolysis, organism-specific biosystem (from KEGG)
    Ubiquitin mediated proteolysis, organism-specific biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
  • Ubiquitin mediated proteolysis, conserved biosystem (from KEGG)
    Ubiquitin mediated proteolysis, conserved biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
  • Wnt signaling pathway, organism-specific biosystem (from KEGG)
    Wnt signaling pathway, organism-specific biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...
  • Wnt signaling pathway, conserved biosystem (from KEGG)
    Wnt signaling pathway, conserved biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...

General gene information

Homology

General protein information

Preferred Names
F-box/WD repeat-containing protein 1A

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCg6a Primary Assembly

Genomic

  1. NC_006093.5 Reference GRCg6a Primary Assembly

    Range
    23789857..23907913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015288763.2XP_015144249.1  F-box/WD repeat-containing protein 1A isoform X1

    Conserved Domains (5) summary
    COG2319
    Location:363665
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:376654
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:212250
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:254301
    F-box-like; F-box-like
    sd00039
    Location:379414
    7WD40; WD40 repeat [structural motif]
  2. XM_025151777.1XP_025007545.1  F-box/WD repeat-containing protein 1A isoform X12

    Conserved Domains (4) summary
    cd00200
    Location:243521
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:246281
    7WD40; WD40 repeat [structural motif]
    pfam12125
    Location:79117
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:121168
    F-box-like
  3. XM_004942220.3XP_004942277.1  F-box/WD repeat-containing protein 1A isoform X10

    Conserved Domains (5) summary
    COG2319
    Location:278580
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:291569
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:127165
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:169216
    F-box-like; F-box-like
    sd00039
    Location:294329
    7WD40; WD40 repeat [structural motif]
  4. XM_025151778.1XP_025007546.1  F-box/WD repeat-containing protein 1A isoform X13

    Conserved Domains (4) summary
    cd00200
    Location:239517
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:242277
    7WD40; WD40 repeat [structural motif]
    pfam12125
    Location:75113
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:117164
    F-box-like
  5. XM_015288768.2XP_015144254.1  F-box/WD repeat-containing protein 1A isoform X7

    Conserved Domains (5) summary
    COG2319
    Location:304606
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:317595
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:153191
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:195242
    F-box-like; F-box-like
    sd00039
    Location:320355
    7WD40; WD40 repeat [structural motif]
  6. XM_015288765.2XP_015144251.1  F-box/WD repeat-containing protein 1A isoform X3

    Conserved Domains (5) summary
    COG2319
    Location:340642
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:353631
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:189227
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:231278
    F-box-like; F-box-like
    sd00039
    Location:356391
    7WD40; WD40 repeat [structural motif]
  7. XM_025151776.1XP_025007544.1  F-box/WD repeat-containing protein 1A isoform X11

    Conserved Domains (4) summary
    cd00200
    Location:262540
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:265300
    7WD40; WD40 repeat [structural motif]
    pfam12125
    Location:98136
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:140187
    F-box-like
  8. XM_015288766.2XP_015144252.1  F-box/WD repeat-containing protein 1A isoform X5

    Conserved Domains (5) summary
    COG2319
    Location:327629
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:340618
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:176214
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:218265
    F-box-like; F-box-like
    sd00039
    Location:343378
    7WD40; WD40 repeat [structural motif]
  9. XM_015288769.2XP_015144255.1  F-box/WD repeat-containing protein 1A isoform X8

    Conserved Domains (5) summary
    COG2319
    Location:289591
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:302580
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:138176
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:180227
    F-box-like; F-box-like
    sd00039
    Location:305340
    7WD40; WD40 repeat [structural motif]
  10. XM_004942217.3XP_004942274.1  F-box/WD repeat-containing protein 1A isoform X4

    Conserved Domains (5) summary
    COG2319
    Location:337639
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:350628
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:186224
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:228275
    F-box-like; F-box-like
    sd00039
    Location:353388
    7WD40; WD40 repeat [structural motif]
  11. XM_015288770.2XP_015144256.1  F-box/WD repeat-containing protein 1A isoform X9

    Conserved Domains (5) summary
    COG2319
    Location:285587
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:298576
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:134172
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:176223
    F-box-like; F-box-like
    sd00039
    Location:301336
    7WD40; WD40 repeat [structural motif]
  12. XM_015288767.2XP_015144253.1  F-box/WD repeat-containing protein 1A isoform X6

    UniProtKB/TrEMBL
    A0A1D5P3W6
    Conserved Domains (5) summary
    COG2319
    Location:315617
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:328606
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:164202
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:206253
    F-box-like; F-box-like
    sd00039
    Location:331366
    7WD40; WD40 repeat [structural motif]
  13. XM_015288764.2XP_015144250.1  F-box/WD repeat-containing protein 1A isoform X2

    Conserved Domains (5) summary
    COG2319
    Location:347649
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:360638
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:196234
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:238285
    F-box-like; F-box-like
    sd00039
    Location:363398
    7WD40; WD40 repeat [structural motif]
  14. XM_015288771.2XP_015144257.1  F-box/WD repeat-containing protein 1A isoform X14

    Conserved Domains (5) summary
    COG2319
    Location:239541
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:252530
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    pfam12125
    Location:88126
    Beta-TrCP_D; D domain of beta-TrCP
    pfam12937
    Location:130177
    F-box-like; F-box-like
    sd00039
    Location:255290
    7WD40; WD40 repeat [structural motif]
Support Center