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LGI1 leucine rich glioma inactivated 1 [ Gallus gallus (chicken) ]

Gene ID: 423802, updated on 2-Apr-2017
Symbol
LGI1provided by CGNC
Full Name
leucine rich glioma inactivated 1provided by CGNC
Primary source
CGNC:66461
See related
Ensembl:ENSGALG00000031720
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Gallus_gallus-5.0 (GCF_000002315.4) 6 NC_006093.4 (20287496..20321885, complement)
102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 6 NC_006093.3 (19846792..19858668, complement)

Chromosome 6 - NC_006093.4Genomic Context describing neighboring genes Neighboring gene NOC3 like DNA replication regulator Neighboring gene phospholipase C epsilon 1 Neighboring gene solute carrier family 35 member G1 Neighboring gene FRA10A associated CGG repeat 1 Neighboring gene phosphodiesterase 6C Neighboring gene retinol binding protein 4 A, plasma

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Homology

Preferred Names
leucine-rich glioma-inactivated protein 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044655.2NP_001038120.1  leucine-rich glioma-inactivated protein 1 precursor

    See identical proteins and their annotated locations for NP_001038120.1

    Status: PROVISIONAL

    Source sequence(s)
    AY617122
    UniProtKB/TrEMBL
    Q1EGJ8
    Related
    ENSGALP00000054012.1, ENSGALT00000062086.1
    Conserved Domains (6) summary
    smart00370
    Location:106136
    LRR; Leucine-rich repeats, outliers
    smart00082
    Location:148196
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:118139
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:6384
    LRR_RI; leucine-rich repeat [structural motif]
    pfam03736
    Location:292338
    EPTP; EPTP domain
    pfam13855
    Location:63119
    LRR_8; Leucine rich repeat

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gallus_gallus-5.0 Primary Assembly

Genomic

  1. NC_006093.4 Reference Gallus_gallus-5.0 Primary Assembly

    Range
    20287496..20321885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015288603.1XP_015144089.1  leucine-rich glioma-inactivated protein 1 isoform X2

    Conserved Domains (5) summary
    smart00082
    Location:141189
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:6184
    LRR_1; leucine-rich repeat [structural motif]
    pfam03736
    Location:285331
    EPTP; EPTP domain
    pfam12799
    Location:83123
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:63119
    LRR_8; Leucine rich repeat
  2. XM_015288604.1XP_015144090.1  leucine-rich glioma-inactivated protein 1 isoform X3

    Conserved Domains (6) summary
    smart00082
    Location:141189
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:109132
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:6484
    LRR_RI; leucine-rich repeat [structural motif]
    pfam03736
    Location:285331
    EPTP; EPTP domain
    pfam12799
    Location:107141
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:63119
    LRR_8; Leucine rich repeat
  3. XM_015288605.1XP_015144091.1  leucine-rich glioma-inactivated protein 1 isoform X4

    Conserved Domains (6) summary
    smart00082
    Location:141189
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:109132
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:6384
    LRR_RI; leucine-rich repeat [structural motif]
    pfam03736
    Location:285331
    EPTP; EPTP domain
    pfam12799
    Location:107141
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:63119
    LRR_8; Leucine rich repeat
  4. XM_015288599.1XP_015144085.1  leucine-rich glioma-inactivated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFF3
    Related
    ENSGALP00000051517.1, ENSGALT00000066345.1
    Conserved Domains (6) summary
    smart00082
    Location:165213
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:109132
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:6384
    LRR_RI; leucine-rich repeat [structural motif]
    pfam03736
    Location:309355
    EPTP; EPTP domain
    pfam12799
    Location:107147
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:107165
    LRR_8; Leucine rich repeat
  5. XM_015288602.1XP_015144088.1  leucine-rich glioma-inactivated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFF3
    Conserved Domains (6) summary
    smart00082
    Location:165213
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:109132
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:6384
    LRR_RI; leucine-rich repeat [structural motif]
    pfam03736
    Location:309355
    EPTP; EPTP domain
    pfam12799
    Location:107147
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:107165
    LRR_8; Leucine rich repeat
  6. XM_015288600.1XP_015144086.1  leucine-rich glioma-inactivated protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFF3
    Conserved Domains (6) summary
    smart00082
    Location:165213
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:109132
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:6384
    LRR_RI; leucine-rich repeat [structural motif]
    pfam03736
    Location:309355
    EPTP; EPTP domain
    pfam12799
    Location:107147
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:107165
    LRR_8; Leucine rich repeat
  7. XM_015288607.1XP_015144093.1  leucine-rich glioma-inactivated protein 1 isoform X6

    Conserved Domains (5) summary
    smart00082
    Location:62110
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:629
    LRR_1; leucine-rich repeat [structural motif]
    pfam03736
    Location:206252
    EPTP; EPTP domain
    pfam12799
    Location:444
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:462
    LRR_8; Leucine rich repeat
  8. XM_015288606.1XP_015144092.1  leucine-rich glioma-inactivated protein 1 isoform X5

    Conserved Domains (5) summary
    smart00082
    Location:84132
    LRRCT; Leucine rich repeat C-terminal domain
    sd00031
    Location:2851
    LRR_1; leucine-rich repeat [structural motif]
    pfam03736
    Location:228274
    EPTP; EPTP domain
    pfam12799
    Location:2666
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:2684
    LRR_8; Leucine rich repeat
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