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ARID5B AT-rich interaction domain 5B [ Gallus gallus (chicken) ]

Gene ID: 423661, updated on 5-Sep-2025
Symbol
ARID5Bprovided by CGNC
Full Name
AT-rich interaction domain 5Bprovided by CGNC
Primary source
CGNC:2164
See related
Ensembl:ENSGALG00010009502
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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See ARID5B in Genome Data Viewer
Location:
chromosome: 6
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 6 NC_052537.1 (8955309..9099094, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 6 NC_052578.1 (8834289..8978085, complement)

Chromosome 6 - NC_052537.1Genomic Context describing neighboring genes Neighboring gene rhotekin 2 Neighboring gene uncharacterized LOC107053635 Neighboring gene zinc finger protein 365 Neighboring gene soluble scavenger receptor cysteine-rich domain-containing protein SSC5D-like Neighboring gene uncharacterized LOC112532727 Neighboring gene uncharacterized LOC107053637 Neighboring gene ciliary associated calcium binding coiled-coil 1 Neighboring gene transmembrane protein 26 Neighboring gene 5S ribosomal RNA

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
AT-rich interactive domain-containing protein 5B
Names
ARID domain-containing protein 5B
AT rich interactive domain 5B (MRF1-like)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031220.2 → NP_001026391.2  AT-rich interactive domain-containing protein 5B

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000227
    UniProtKB/Swiss-Prot
    Q5ZJ69
    UniProtKB/TrEMBL
    A0A8V0YB04
    Related
    ENSGALP00010013105.1, ENSGALT00010022689.1
    Conserved Domains (2) summary
    TIGR03657
    Location:400 → 535
    IsdB; heme uptake protein IsdB
    cd16885
    Location:323 → 417
    ARID_ARID5B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 5B (ARID5B) and similar proteins

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052537.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    8955309..9099094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040702376.2 → XP_040558310.1  AT-rich interactive domain-containing protein 5B isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y6D5
    Conserved Domains (2) summary
    TIGR03657
    Location:267 → 402
    IsdB; heme uptake protein IsdB
    cd16885
    Location:190 → 284
    ARID_ARID5B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 5B (ARID5B) and similar proteins

  2. XM_015288120.4 → XP_015143606.2  AT-rich interactive domain-containing protein 5B isoform X1

    UniProtKB/Swiss-Prot
    Q5ZJ69
    Conserved Domains (2) summary
    TIGR03657
    Location:403 → 538
    IsdB; heme uptake protein IsdB
    cd16885
    Location:326 → 420
    ARID_ARID5B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 5B (ARID5B) and similar proteins

  3. XM_046942834.1 → XP_046798790.1  AT-rich interactive domain-containing protein 5B isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y6D5

  4. XM_040702377.2 → XP_040558311.1  AT-rich interactive domain-containing protein 5B isoform X4

    UniProtKB/TrEMBL
    A0A8V0Y6D5
    Conserved Domains (2) summary
    TIGR03657
    Location:162 → 297
    IsdB; heme uptake protein IsdB
    cd16885
    Location:85 → 179
    ARID_ARID5B; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 5B (ARID5B) and similar proteins

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052578.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    8834289..8978085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046920109.1 → XP_046776065.1  AT-rich interactive domain-containing protein 5B isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y6D5

  2. XM_046920108.1 → XP_046776064.1  AT-rich interactive domain-containing protein 5B isoform X1

    UniProtKB/Swiss-Prot
    Q5ZJ69

  3. XM_046920110.1 → XP_046776066.1  AT-rich interactive domain-containing protein 5B isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y6D5

  4. XM_046920111.1 → XP_046776067.1  AT-rich interactive domain-containing protein 5B isoform X3

    UniProtKB/TrEMBL
    A0A8V0Y6D5

  5. XM_046920112.1 → XP_046776068.1  AT-rich interactive domain-containing protein 5B isoform X4

    UniProtKB/TrEMBL
    A0A8V0Y6D5
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZJ69.1 GenPept UniProtKB/Swiss-Prot:Q5ZJ69

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