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ABCD4 ATP binding cassette subfamily D member 4 [ Gallus gallus (chicken) ]

Gene ID: 423349, updated on 11-Apr-2024

Summary

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Symbol
ABCD4provided by CGNC
Full Name
ATP binding cassette subfamily D member 4provided by CGNC
Primary source
CGNC:7783
See related
Ensembl:ENSGALG00010006311
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (37362511..37375919, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (37332314..37345718, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene lin-52 DREAM MuvB core complex component Neighboring gene visual system homeobox 2 Neighboring gene acyl-CoA synthetase short chain family member 1B Neighboring gene microRNA 6598 Neighboring gene vertebrae development associated Neighboring gene synapse differentiation inducing 1 like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables long-chain fatty acid transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-chain fatty acid import into peroxisome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peroxisome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in peroxisomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family D member 4; lysosomal cobalamin transporter ABCD4
Names
ATP-binding cassette, sub-family D (ALD), member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    37362511..37375919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046942125.1 → XP_046798081.1  lysosomal cobalamin transporter ABCD4 isoform X10

  2. XM_046942123.1 → XP_046798079.1  lysosomal cobalamin transporter ABCD4 isoform X6

    Related
    ENSGALP00010008847.1, ENSGALT00010015061.1

  3. XM_025151063.3 → XP_025006831.2  lysosomal cobalamin transporter ABCD4 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (2) summary
    cd03223
    Location:300 → 511
    ABCD_peroxisomal_ALDP; ATP-binding cassette domain of peroxisomal transporter, subfamily D
    COG4178
    Location:104 → 514
    YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

  4. XM_040701988.2 → XP_040557922.1  lysosomal cobalamin transporter ABCD4 isoform X8

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (1) summary
    COG4178
    Location:104 → 530
    YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

  5. XM_040701989.2 → XP_040557923.1  lysosomal cobalamin transporter ABCD4 isoform X10

    UniProtKB/TrEMBL
    A0A8V0XKY2
    Conserved Domains (1) summary
    TIGR00954
    Location:20 → 492
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein

  6. XM_025151062.3 → XP_025006830.2  lysosomal cobalamin transporter ABCD4 isoform X7

    UniProtKB/TrEMBL
    A0A8V0XQ74, A0A8V0XS92
    Related
    ENSGALP00010008846.1, ENSGALT00010015058.1
    Conserved Domains (1) summary
    COG4178
    Location:22 → 563
    YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

  7. XM_040701987.2 → XP_040557921.1  lysosomal cobalamin transporter ABCD4 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (1) summary
    TIGR00954
    Location:89 → 578
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein

  8. XM_025151061.3 → XP_025006829.2  lysosomal cobalamin transporter ABCD4 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (1) summary
    TIGR00954
    Location:89 → 603
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein

  9. XM_040701986.2 → XP_040557920.1  lysosomal cobalamin transporter ABCD4 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (1) summary
    TIGR00954
    Location:89 → 619
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein

  10. XM_015287673.4 → XP_015143159.2  lysosomal cobalamin transporter ABCD4 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XS92
    Related
    ENSGALP00010008844.1, ENSGALT00010015055.1
    Conserved Domains (1) summary
    TIGR00954
    Location:89 → 604
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein

  11. XM_040701985.2 → XP_040557919.1  lysosomal cobalamin transporter ABCD4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (1) summary
    TIGR00954
    Location:89 → 620
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    37332314..37345718 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046919113.1 → XP_046775069.1  lysosomal cobalamin transporter ABCD4 isoform X10

  2. XM_046919112.1 → XP_046775068.1  lysosomal cobalamin transporter ABCD4 isoform X6

  3. XM_040672715.2 → XP_040528649.1  lysosomal cobalamin transporter ABCD4 isoform X9

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (2) summary
    cd03223
    Location:300 → 511
    ABCD_peroxisomal_ALDP; ATP-binding cassette domain of peroxisomal transporter, subfamily D
    COG4178
    Location:104 → 514
    YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

  4. XM_040672714.2 → XP_040528648.1  lysosomal cobalamin transporter ABCD4 isoform X8

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (1) summary
    COG4178
    Location:104 → 530
    YddA; ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

  5. XM_040672716.2 → XP_040528650.1  lysosomal cobalamin transporter ABCD4 isoform X10

    UniProtKB/TrEMBL
    A0A8V0XKY2
    Conserved Domains (1) summary
    TIGR00954
    Location:20 → 492
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein

  6. XM_040672713.2 → XP_040528647.1  lysosomal cobalamin transporter ABCD4 isoform X7

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (1) summary
    TIGR00954
    Location:25 → 562
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein

  7. XM_040672712.2 → XP_040528646.1  lysosomal cobalamin transporter ABCD4 isoform X5

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (1) summary
    TIGR00954
    Location:25 → 578
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein

  8. XM_040672711.2 → XP_040528645.1  lysosomal cobalamin transporter ABCD4 isoform X4

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (1) summary
    TIGR00954
    Location:25 → 603
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein

  9. XM_040672709.2 → XP_040528643.1  lysosomal cobalamin transporter ABCD4 isoform X2

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (1) summary
    TIGR00954
    Location:25 → 619
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein

  10. XM_040672710.2 → XP_040528644.1  lysosomal cobalamin transporter ABCD4 isoform X3

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (1) summary
    TIGR00954
    Location:25 → 604
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein

  11. XM_040672708.2 → XP_040528642.1  lysosomal cobalamin transporter ABCD4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XS92
    Conserved Domains (1) summary
    TIGR00954
    Location:25 → 620
    3a01203; Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein
Nucleotide Protein
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