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GAL galanin and GMAP prepropeptide [ Gallus gallus (chicken) ]

Gene ID: 423117, updated on 17-Aug-2024
Official Symbol
GALprovided by CGNC
Official Full Name
galanin and GMAP prepropeptideprovided by CGNC
Primary source
CGNC:5321
See related
Ensembl:ENSGALG00010025881
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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See GAL in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (16149134..16157097)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (16123429..16131393)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107053423 Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene protein phosphatase 6 regulatory subunit 3 Neighboring gene testis expressed metallothionein like protein Neighboring gene uncharacterized LOC101751123 Neighboring gene carnitine palmitoyltransferase 1A

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Chemical detection of natural peptides by specific structures. Isolation of chicken galanin by monitoring for its N-terminal dipeptide, and determination of the amino acid sequence. Norberg A, et al. FEBS Lett, 1991 Aug 19. PMID 1715289
  2. Early development of chick embryo respiratory nervous system: an immunohistochemical study. Vaccaro R, et al. Anat Embryol (Berl), 2006 Oct. PMID 16633821
  3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. GAL proves to be the main peptide in chick embryo sympathetic respiratory system
    Title: Early development of chick embryo respiratory nervous system: an immunohistochemical study.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hormone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
galanin
Names
galanin prepropeptide
galanin/GMAP prepropeptide

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145389.3 → NP_001138861.1  galanin isoform 2 precursor

    See identical proteins and their annotated locations for NP_001138861.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon in the 5' coding region compared to variant 1. The encoded isoform (2) is shorter compared to isoform 1.
    Source sequence(s)
    JAENSK010000214
    UniProtKB/TrEMBL
    B9W050
    Conserved Domains (2) summary
    pfam01296
    Location:33 → 60
    Galanin; Galanin
    pfam06540
    Location:62 → 113
    GMAP; Galanin message associated peptide (GMAP)

  2. NM_001159678.2 → NP_001153150.1  galanin isoform 1 precursor

    See identical proteins and their annotated locations for NP_001153150.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    JAENSK010000214
    UniProtKB/TrEMBL
    C3V8R3
    Related
    ENSGALP00010038936.1, ENSGALT00010063085.1
    Conserved Domains (2) summary
    pfam01296
    Location:33 → 84
    Galanin; Galanin
    pfam06540
    Location:86 → 137
    GMAP; Galanin message associated peptide (GMAP)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    16149134..16157097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    16123429..16131393
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P30802.1 GenPept UniProtKB/Swiss-Prot:P30802

Gene LinkOut

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