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CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component [ Gallus gallus (chicken) ]

Gene ID: 423035, updated on 17-Aug-2024
Symbol
CTR9provided by CGNC
Full Name
CTR9 homolog, Paf1/RNA polymerase II complex componentprovided by CGNC
Primary source
CGNC:4182
See related
Ensembl:ENSGALG00010021050
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
SH2BP1
Orthologs
human mouse all
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See CTR9 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
25
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (8450144..8468646, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (8418868..8437581, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene polypeptide N-acetylgalactosaminyltransferase 18 Neighboring gene uncharacterized LOC107053374 Neighboring gene small nucleolar RNA SNORD97 Neighboring gene uncharacterized LOC124418014 Neighboring gene eukaryotic translation initiation factor 4 gamma 2 Neighboring gene inositol 1,4,5-triphosphate receptor associated 1 Neighboring gene lymphatic vessel endothelial hyaluronan receptor 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cdc73/Paf1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
RNA polymerase-associated protein CTR9 homolog
Names
Ctr9, Paf1/RNA polymerase II complex component, homolog
SH2 domain binding protein 1 (tetratricopeptide repeat containing)

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    8450144..8468646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_420968.8 → XP_420968.3  RNA polymerase-associated protein CTR9 homolog

    UniProtKB/TrEMBL
    A0A8V0ZFS3, A0A8V0ZFS8
    Related
    ENSGALP00010030127.1, ENSGALT00010050936.1
    Conserved Domains (3) summary
    TIGR02917
    Location:110 → 781
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:501 → 525
    TPR; TPR repeat [structural motif]
    NF033609
    Location:1029 → 1166
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    8418868..8437581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040673543.2 → XP_040529477.1  RNA polymerase-associated protein CTR9 homolog

    UniProtKB/TrEMBL
    A0A8V0ZFS3, A0A8V0ZFS8
    Conserved Domains (3) summary
    TIGR02917
    Location:110 → 781
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:501 → 525
    TPR; TPR repeat [structural motif]
    NF033609
    Location:1029 → 1166
    MSCRAMM_ClfA; MSCRAMM family adhesin clumping factor ClfA
Nucleotide Protein
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