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USP47 ubiquitin specific peptidase 47 [ Gallus gallus (chicken) ]

Gene ID: 423032, updated on 13-Apr-2026
Official Symbol
USP47provided by CGNC
Official Full Name
ubiquitin specific peptidase 47provided by CGNC
Primary source
CGNC:4147
See related
Ensembl:ENSGALG00010022108
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
all
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Try the new Transcripts and proteins table
See USP47 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
30
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 5 NC_052536.1 (7836159..7888839, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 5 NC_052577.1 (7804262..7856977, complement)

Chromosome 5 - NC_052536.1Genomic Context describing neighboring genes Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 2 Neighboring gene microRNA 1568 Neighboring gene dickkopf WNT signaling pathway inhibitor 3 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 18 Neighboring gene uncharacterized LOC100859067 Neighboring gene uncharacterized LOC107053374

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Gga-miR-30d regulates infectious bronchitis virus infection by targeting USP47 in HD11 cells. Li H, et al. Microb Pathog, 2020 Apr. PMID 31982568, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Gga-miR-30d regulates infectious bronchitis virus infection by targeting USP47 in HD11 cells.
    Title: Gga-miR-30d regulates infectious bronchitis virus infection by targeting USP47 in HD11 cells.
Submit: New GeneRIF Correction

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
ubiquitin carboxyl-terminal hydrolase 47
Names
deubiquitinating enzyme 47
ubiquitin specific protease 47
ubiquitin thioesterase 47
ubiquitin thiolesterase 47
ubiquitin-specific-processing protease 47
NP_001186511.1
XP_015141854.2
XP_015141855.2
XP_015141856.1
XP_040556749.1
XP_040556750.1
XP_040556751.1
XP_046774090.1
XP_046774091.1
XP_046774092.1
XP_046774093.1
XP_046774094.1
XP_046774095.1
XP_046774096.1

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199582.2 → NP_001186511.1  ubiquitin carboxyl-terminal hydrolase 47

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000214
    UniProtKB/Swiss-Prot
    E1C1R4
    UniProtKB/TrEMBL
    R4GJH4
    Related
    ENSGALP00010032394.1, ENSGALT00010053811.1
    Conserved Domains (2) summary
    cd02659
    Location:186 → 566
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:187 → 561
    UCH; Ubiquitin carboxyl-terminal hydrolase

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052536.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    7836159..7888839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040700817.2 → XP_040556751.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X6

    UniProtKB/Swiss-Prot
    E1C1R4
    Conserved Domains (1) summary
    cd02659
    Location:166 → 545
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  2. XM_015286370.4 → XP_015141856.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X5

    UniProtKB/Swiss-Prot
    E1C1R4
    UniProtKB/TrEMBL
    R9PXM3
    Related
    ENSGALP00010032387.1, ENSGALT00010053795.1
    Conserved Domains (2) summary
    cd02659
    Location:166 → 546
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:167 → 541
    UCH; Ubiquitin carboxyl-terminal hydrolase

  3. XM_040700816.2 → XP_040556750.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X4

    UniProtKB/Swiss-Prot
    E1C1R4
    Conserved Domains (1) summary
    cd02659
    Location:171 → 551
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  4. XM_040700815.2 → XP_040556749.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X3

    UniProtKB/Swiss-Prot
    E1C1R4
    Conserved Domains (1) summary
    cd02659
    Location:191 → 571
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  5. XM_015286368.4 → XP_015141854.2  ubiquitin carboxyl-terminal hydrolase 47 isoform X2

    UniProtKB/Swiss-Prot
    E1C1R4
    Conserved Domains (1) summary
    cd02659
    Location:171 → 551
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  6. XM_015286369.4 → XP_015141855.2  ubiquitin carboxyl-terminal hydrolase 47 isoform X1

    UniProtKB/Swiss-Prot
    E1C1R4
    Conserved Domains (1) summary
    cd02659
    Location:172 → 551
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052577.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    7804262..7856977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046918140.1 → XP_046774096.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X6

    UniProtKB/Swiss-Prot
    E1C1R4

  2. XM_046918139.1 → XP_046774095.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X5

    UniProtKB/Swiss-Prot
    E1C1R4
    UniProtKB/TrEMBL
    R9PXM3

  3. XM_046918138.1 → XP_046774094.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X4

    UniProtKB/Swiss-Prot
    E1C1R4

  4. XM_046918136.1 → XP_046774092.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X3

    UniProtKB/Swiss-Prot
    E1C1R4

  5. XM_046918137.1 → XP_046774093.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X7

    UniProtKB/Swiss-Prot
    E1C1R4
    UniProtKB/TrEMBL
    A0A8V0ZU50

  6. XM_046918135.1 → XP_046774091.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X2

    UniProtKB/Swiss-Prot
    E1C1R4

  7. XM_046918134.1 → XP_046774090.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X1

    UniProtKB/Swiss-Prot
    E1C1R4
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E1C1R4.1 GenPept UniProtKB/Swiss-Prot:E1C1R4

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