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PASD1 PAS domain containing 1 [ Gallus gallus (chicken) ]

Gene ID: 422384, updated on 17-Jun-2019

Summary

Symbol
PASD1provided by CGNC
Full Name
PAS domain containing 1provided by CGNC
Primary source
CGNC:51725
See related
Ensembl:ENSGALG00000009063
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs

Genomic context

See PASD1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
23
Annotation release Status Assembly Chr Location
104 current GRCg6a (GCF_000002315.5) 4 NC_006091.5 (17403671..17492878, complement)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 4 NC_006091.4 (17473676..17562886, complement)
102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 4 NC_006091.3 (17365319..17413035, complement)

Chromosome 4 - NC_006091.5Genomic Context describing neighboring genes Neighboring gene chromosome 4 CXorf57 homolog Neighboring gene ring finger protein 128, E3 ubiquitin protein ligase Neighboring gene TBC1 domain family member 8B Neighboring gene VMA21 vacuolar H+-ATPase homolog (S. cerevisiae) Neighboring gene G protein-coupled receptor 50

Genomic regions, transcripts, and products

General protein information

Preferred Names
circadian clock protein PASD1
Names
PAS domain containing repressor 1

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCg6a Primary Assembly

Genomic

  1. NC_006091.5 Reference GRCg6a Primary Assembly

    Range
    17403671..17492878 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015278642.2XP_015134128.1  circadian clock protein PASD1 isoform X1

    Conserved Domains (6) summary
    smart00091
    Location:86147
    PAS; PAS domain
    cd00083
    Location:763
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:252350
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam09606
    Location:427846
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam00989
    Location:86157
    PAS; PAS fold
    pfam14598
    Location:251354
    PAS_11; PAS domain
  2. XM_004940851.3XP_004940908.1  circadian clock protein PASD1 isoform X1

    Conserved Domains (6) summary
    smart00091
    Location:86147
    PAS; PAS domain
    cd00083
    Location:763
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:252350
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam09606
    Location:427846
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam00989
    Location:86157
    PAS; PAS fold
    pfam14598
    Location:251354
    PAS_11; PAS domain
  3. XM_015278643.2XP_015134129.1  circadian clock protein PASD1 isoform X2

    Related
    ENSGALP00000014735.6, ENSGALT00000014751.6
    Conserved Domains (5) summary
    smart00091
    Location:86147
    PAS; PAS domain
    cd00083
    Location:763
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:252350
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam00989
    Location:86157
    PAS; PAS fold
    pfam14598
    Location:251354
    PAS_11; PAS domain
  4. XM_015278644.2XP_015134130.1  circadian clock protein PASD1 isoform X3

    Conserved Domains (6) summary
    smart00091
    Location:86147
    PAS; PAS domain
    cd00083
    Location:763
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:252350
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam09606
    Location:427815
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam00989
    Location:86157
    PAS; PAS fold
    pfam14598
    Location:251354
    PAS_11; PAS domain
  5. XM_004940852.3XP_004940909.1  circadian clock protein PASD1 isoform X4

    Conserved Domains (2) summary
    cd00130
    Location:100198
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam14598
    Location:99202
    PAS_11; PAS domain
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