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TMLHE trimethyllysine hydroxylase, epsilon [ Gallus gallus (chicken) ]

Gene ID: 422296, updated on 17-Sep-2018

Summary

Symbol
TMLHEprovided by CGNC
Full Name
trimethyllysine hydroxylase, epsilonprovided by CGNC
Primary source
CGNC:5617
See related
Ensembl:ENSGALG00000007443
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs

Genomic context

See TMLHE in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
104 current GRCg6a (GCF_000002315.5) 4 NC_006091.5 (10995970..11017060, complement)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 4 NC_006091.4 (11050861..11066018, complement)

Chromosome 4 - NC_006091.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC422295 Neighboring gene hepatocyte cell adhesion molecule-like Neighboring gene uncharacterized LOC112532315 Neighboring gene uncharacterized LOC112532316 Neighboring gene sprouty RTK signaling antagonist 3 Neighboring gene uncharacterized LOC100859281 Neighboring gene uncharacterized LOC107052110

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
carnitine biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
carnitine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
carnitine biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
 
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 
mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
trimethyllysine dioxygenase, mitochondrial
Names
TML dioxygenase
TML hydroxylase
TML-alpha-ketoglutarate dioxygenase
TMLD
epsilon-trimethyllysine 2-oxoglutarate dioxygenase
NP_001012593.1
XP_015133768.1
XP_015133770.1
XP_025005333.1
XP_025005335.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012575.1NP_001012593.1  trimethyllysine dioxygenase, mitochondrial

    See identical proteins and their annotated locations for NP_001012593.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ851387
    UniProtKB/Swiss-Prot
    Q5F4B3
    Related
    ENSGALP00000012029.3, ENSGALT00000012043.3
    Conserved Domains (1) summary
    cl26676
    Location:67416
    TauD; Taurine dioxygenase, alpha-ketoglutarate-dependent [Secondary metabolites biosynthesis, transport and catabolism]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCg6a Primary Assembly

Genomic

  1. NC_006091.5 Reference GRCg6a Primary Assembly

    Range
    10995970..11017060 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025149567.1XP_025005335.1  trimethyllysine dioxygenase, mitochondrial isoform X1

    Conserved Domains (1) summary
    cl26676
    Location:67416
    TauD; Taurine dioxygenase, alpha-ketoglutarate-dependent [Secondary metabolites biosynthesis, transport and catabolism]
  2. XM_025149565.1XP_025005333.1  trimethyllysine dioxygenase, mitochondrial isoform X1

    Conserved Domains (1) summary
    cl26676
    Location:67416
    TauD; Taurine dioxygenase, alpha-ketoglutarate-dependent [Secondary metabolites biosynthesis, transport and catabolism]
  3. XM_015278284.2XP_015133770.1  trimethyllysine dioxygenase, mitochondrial isoform X1

    UniProtKB/Swiss-Prot
    Q5F4B3
    Conserved Domains (1) summary
    cl26676
    Location:67416
    TauD; Taurine dioxygenase, alpha-ketoglutarate-dependent [Secondary metabolites biosynthesis, transport and catabolism]
  4. XM_015278282.2XP_015133768.1  trimethyllysine dioxygenase, mitochondrial isoform X1

    UniProtKB/Swiss-Prot
    Q5F4B3
    Conserved Domains (1) summary
    cl26676
    Location:67416
    TauD; Taurine dioxygenase, alpha-ketoglutarate-dependent [Secondary metabolites biosynthesis, transport and catabolism]
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