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CSTF2 cleavage stimulation factor subunit 2 [ Gallus gallus (chicken) ]

Gene ID: 422258, updated on 17-Aug-2024
Symbol
CSTF2provided by CGNC
Full Name
cleavage stimulation factor subunit 2provided by CGNC
Primary source
CGNC:51677
See related
Ensembl:ENSGALG00010016704
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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See CSTF2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (5108254..5114845, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (5143811..5150401, complement)

Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene XK related protein X Neighboring gene NADPH oxidase 1 Neighboring gene tRNA methyltransferase 12 homolog Neighboring gene synaptotagmin like 4

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
cleavage stimulation factor subunit 2
Names
cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006433.3 → NP_001006433.1  cleavage stimulation factor subunit 2

    See identical proteins and their annotated locations for NP_001006433.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000071
    UniProtKB/TrEMBL
    Q5ZLS0
    Related
    ENSGALP00010023356.1, ENSGALT00010040276.1
    Conserved Domains (4) summary
    COG0724
    Location:16 → 104
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12671
    Location:18 → 92
    RRM_CSTF2_CSTF2T; RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), cleavage stimulation factor subunit 2 tau variant (CSTF2T) and similar proteins
    pfam14304
    Location:431 → 471
    CSTF_C; Transcription termination and cleavage factor C-terminal
    pfam14327
    Location:113 → 191
    CSTF2_hinge; Hinge domain of cleavage stimulation factor subunit 2

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5108254..5114845 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015278275.4 → XP_015133761.1  cleavage stimulation factor subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2UCR0
    Related
    ENSGALP00010023349.1, ENSGALT00010040269.1
    Conserved Domains (4) summary
    COG0724
    Location:16 → 104
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12671
    Location:18 → 92
    RRM_CSTF2_CSTF2T; RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), cleavage stimulation factor subunit 2 tau variant (CSTF2T) and similar proteins
    pfam14304
    Location:529 → 569
    CSTF_C; Transcription termination and cleavage factor C-terminal
    pfam14327
    Location:113 → 191
    CSTF2_hinge; Hinge domain of cleavage stimulation factor subunit 2

  2. XM_015278274.4 → XP_015133760.1  cleavage stimulation factor subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YX48
    Related
    ENSGALP00010023353.1, ENSGALT00010040273.1
    Conserved Domains (4) summary
    COG0724
    Location:16 → 104
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12671
    Location:18 → 92
    RRM_CSTF2_CSTF2T; RNA recognition motif in cleavage stimulation factor subunit 2 (CSTF2), cleavage stimulation factor subunit 2 tau variant (CSTF2T) and similar proteins
    pfam14304
    Location:549 → 589
    CSTF_C; Transcription termination and cleavage factor C-terminal
    pfam14327
    Location:113 → 191
    CSTF2_hinge; Hinge domain of cleavage stimulation factor subunit 2

  3. XM_015278276.4 → XP_015133762.1  cleavage stimulation factor subunit 2 isoform X3

    Conserved Domains (2) summary
    pfam14304
    Location:458 → 498
    CSTF_C; Transcription termination and cleavage factor C-terminal
    pfam14327
    Location:22 → 100
    CSTF2_hinge; Hinge domain of cleavage stimulation factor subunit 2

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5143811..5150401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046915814.1 → XP_046771770.1  cleavage stimulation factor subunit 2 isoform X2

    UniProtKB/TrEMBL
    A0A3Q2UCR0

  2. XM_046915813.1 → XP_046771769.1  cleavage stimulation factor subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YX48

  3. XM_046915815.1 → XP_046771771.1  cleavage stimulation factor subunit 2 isoform X3

Nucleotide Protein Strain
Heading Accession and Version

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