U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

HMBOX1 homeobox containing 1 [ Gallus gallus (chicken) ]

Gene ID: 422024, updated on 5-Aug-2026
Symbol
HMBOX1provided by CGNC
Full Name
homeobox containing 1provided by CGNC
Primary source
CGNC:12465
See related
Ensembl:ENSGALG00010011028
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
Try the new Gene page
Try the new Transcripts and proteins table
See HMBOX1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
15
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (105896186..106022287)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (105659732..105785732)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene exostosin like glycosyltransferase 3 Neighboring gene integrator complex subunit 9 Neighboring gene kinesin family member 13B Neighboring gene uncharacterized LOC121110419 Neighboring gene uncharacterized LOC124417864

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
PubMed 
Preferred Names
homeobox-containing protein 1

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277716.3NP_001264645.1  homeobox-containing protein 1

    See identical proteins and their annotated locations for NP_001264645.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000070
    UniProtKB/TrEMBL
    A0A8V0YBM2, E1BZ53
    Related
    ENSGALP00010015037.1, ENSGALT00010026425.1
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    105896186..106022287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015285113.4XP_015140599.1  homeobox-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7V0, A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  2. XM_015285111.4XP_015140597.1  homeobox-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7V0, A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  3. XM_015285118.4XP_015140604.1  homeobox-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  4. XM_015285121.4XP_015140607.1  homeobox-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  5. XM_015285124.4XP_015140610.1  homeobox-containing protein 1 isoform X15

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  6. XM_015285116.4XP_015140602.1  homeobox-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  7. XM_015285119.4XP_015140605.1  homeobox-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0YBM2, E1BZ53
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  8. XM_015285125.4XP_015140611.1  homeobox-containing protein 1 isoform X16

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  9. XM_015285117.4XP_015140603.1  homeobox-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  10. XM_040697245.2XP_040553179.1  homeobox-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  11. XM_025148798.3XP_025004566.1  homeobox-containing protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  12. XM_015285123.4XP_015140609.1  homeobox-containing protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:232304
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25197
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  13. XM_040697251.2XP_040553185.1  homeobox-containing protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (1) summary
    cd00086
    Location:232304
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
  14. XM_040697258.2XP_040553192.1  homeobox-containing protein 1 isoform X18

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (1) summary
    cd00086
    Location:232304
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
  15. XM_040697254.2XP_040553188.1  homeobox-containing protein 1 isoform X13

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (1) summary
    cd00086
    Location:232304
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
  16. XM_015285112.4XP_015140598.1  homeobox-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7V0, A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  17. XM_015285115.4XP_015140601.1  homeobox-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7V0, A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  18. XM_040697242.2XP_040553176.1  homeobox-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  19. XM_040697256.2XP_040553190.1  homeobox-containing protein 1 isoform X15

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  20. XM_040697238.2XP_040553172.1  homeobox-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  21. XM_040697244.2XP_040553178.1  homeobox-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0YBM2, E1BZ53
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  22. XM_046938967.1XP_046794923.1  homeobox-containing protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A8V0YBM2
  23. XM_040697246.2XP_040553180.1  homeobox-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  24. XM_046938970.1XP_046794926.1  homeobox-containing protein 1 isoform X17

    UniProtKB/TrEMBL
    A0A8V0YBM2, A0A8V0YGB9
    Related
    ENSGALP00010015045.1, ENSGALT00010026433.1
  25. XM_046938973.1XP_046794929.1  homeobox-containing protein 1 isoform X21

    UniProtKB/TrEMBL
    A0A8V0YBM2
  26. XM_040697253.2XP_040553187.1  homeobox-containing protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (1) summary
    cd00086
    Location:232304
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
  27. XM_046938971.1XP_046794927.1  homeobox-containing protein 1 isoform X19

    UniProtKB/TrEMBL
    A0A8V0YBM2
  28. XM_046938968.1XP_046794924.1  homeobox-containing protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A8V0Y9D8, A0A8V0Y9F0
    Related
    ENSGALP00010015031.1, ENSGALT00010026417.1
  29. XM_046938969.1XP_046794925.1  homeobox-containing protein 1 isoform X14

    UniProtKB/TrEMBL
    A0A8V0Y7W4, A0A8V0Y9F0
    Related
    ENSGALP00010015048.1, ENSGALT00010026436.1
  30. XM_046938972.1XP_046794928.1  homeobox-containing protein 1 isoform X20

    UniProtKB/TrEMBL
    A0A8V0Y9F0
  31. XM_046938966.1XP_046794922.1  homeobox-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7V0, A0A8V0YBM2
    Related
    ENSGALP00010015033.1, ENSGALT00010026419.1
  32. XM_040697235.2XP_040553169.1  homeobox-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7V0, A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus
  33. XM_025148796.3XP_025004564.1  homeobox-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YBM2
    Conserved Domains (2) summary
    cd00086
    Location:269341
    homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
    pfam04814
    Location:25228
    HNF-1_N; Hepatocyte nuclear factor 1 (HNF-1), N-terminus

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    105659732..105785732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046914255.1XP_046770211.1  homeobox-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7V0, A0A8V0YBM2
  2. XM_046914252.1XP_046770208.1  homeobox-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7V0, A0A8V0YBM2
  3. XM_046914260.1XP_046770216.1  homeobox-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YBM2
  4. XM_046914267.1XP_046770223.1  homeobox-containing protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A8V0YBM2
  5. XM_046914276.1XP_046770232.1  homeobox-containing protein 1 isoform X15

    UniProtKB/TrEMBL
    A0A8V0YBM2
  6. XM_046914258.1XP_046770214.1  homeobox-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YBM2
  7. XM_046914263.1XP_046770219.1  homeobox-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0YBM2, E1BZ53
  8. XM_046914278.1XP_046770234.1  homeobox-containing protein 1 isoform X16

    UniProtKB/TrEMBL
    A0A8V0YBM2
  9. XM_046914259.1XP_046770215.1  homeobox-containing protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8V0YBM2
  10. XM_046914265.1XP_046770221.1  homeobox-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0YBM2
  11. XM_046914269.1XP_046770225.1  homeobox-containing protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A8V0YBM2
  12. XM_046914271.1XP_046770227.1  homeobox-containing protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A8V0YBM2
  13. XM_046914272.1XP_046770228.1  homeobox-containing protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A8V0YBM2
  14. XM_046914280.1XP_046770236.1  homeobox-containing protein 1 isoform X18

    UniProtKB/TrEMBL
    A0A8V0YBM2
  15. XM_046914274.1XP_046770230.1  homeobox-containing protein 1 isoform X13

    UniProtKB/TrEMBL
    A0A8V0YBM2
  16. XM_046914254.1XP_046770210.1  homeobox-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7V0, A0A8V0YBM2
  17. XM_046914251.1XP_046770207.1  homeobox-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7V0, A0A8V0YBM2
  18. XM_046914261.1XP_046770217.1  homeobox-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YBM2
  19. XM_046914277.1XP_046770233.1  homeobox-containing protein 1 isoform X15

    UniProtKB/TrEMBL
    A0A8V0YBM2
  20. XM_046914257.1XP_046770213.1  homeobox-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YBM2
  21. XM_046914264.1XP_046770220.1  homeobox-containing protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8V0YBM2, E1BZ53
  22. XM_046914268.1XP_046770224.1  homeobox-containing protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A8V0YBM2
  23. XM_046914266.1XP_046770222.1  homeobox-containing protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A8V0YBM2
  24. XM_046914279.1XP_046770235.1  homeobox-containing protein 1 isoform X17

    UniProtKB/TrEMBL
    A0A8V0YBM2, A0A8V0YGB9
  25. XM_046914283.1XP_046770239.1  homeobox-containing protein 1 isoform X21

    UniProtKB/TrEMBL
    A0A8V0YBM2
  26. XM_046914273.1XP_046770229.1  homeobox-containing protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A8V0YBM2
  27. XM_046914281.1XP_046770237.1  homeobox-containing protein 1 isoform X19

    UniProtKB/TrEMBL
    A0A8V0YBM2
  28. XM_046914270.1XP_046770226.1  homeobox-containing protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A8V0Y9D8, A0A8V0Y9F0
  29. XM_046914275.1XP_046770231.1  homeobox-containing protein 1 isoform X14

    UniProtKB/TrEMBL
    A0A8V0Y7W4, A0A8V0Y9F0
  30. XM_046914282.1XP_046770238.1  homeobox-containing protein 1 isoform X20

    UniProtKB/TrEMBL
    A0A8V0Y9F0
  31. XM_046914256.1XP_046770212.1  homeobox-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7V0, A0A8V0YBM2
  32. XM_046914253.1XP_046770209.1  homeobox-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y7V0, A0A8V0YBM2
  33. XM_046914262.1XP_046770218.1  homeobox-containing protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8V0YBM2