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CGA glycoprotein hormones, alpha polypeptide [ Gallus gallus (chicken) ]

Gene ID: 421829, updated on 17-Aug-2024
Symbol
CGAprovided by CGNC
Full Name
glycoprotein hormones, alpha polypeptideprovided by CGNC
Primary source
CGNC:11808
See related
Ensembl:ENSGALG00010003840
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
GPHA
Orthologs
human mouse all
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See CGA in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (76278188..76299905)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (76071266..76092987)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 8 Neighboring gene zinc finger protein 292 Neighboring gene 5-hydroxytryptamine receptor 1E Neighboring gene transfer RNA glutamic acid (anticodon CUC)

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Assignment of the chicken glycoprotein hormones, alpha polypeptide (CGA) gene to chromosome 3. Yang J, et al. Anim Genet, 2004 Feb. PMID 14731235
  2. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables follicle-stimulating hormone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of steroid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in thyroid hormone generation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of follicle-stimulating hormone complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
glycoprotein hormones alpha chain
Names
pituitary glycoprotein hormone alpha subunit

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001278021.1 → NP_001264950.1  glycoprotein hormones alpha chain precursor

    See identical proteins and their annotated locations for NP_001264950.1

    Status: VALIDATED

    Source sequence(s)
    BE187702, BI395075
    UniProtKB/TrEMBL
    F1NJD3
    Conserved Domains (1) summary
    pfam00236
    Location:32 → 120
    Hormone_6; Glycoprotein hormone

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    76278188..76299905
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040697177.2 → XP_040553111.1  glycoprotein hormones alpha chain isoform X1

    UniProtKB/TrEMBL
    F1NJD3
    Conserved Domains (1) summary
    pfam00236
    Location:32 → 120
    Hormone_6; Glycoprotein hormone

  2. XM_040697176.2 → XP_040553110.1  glycoprotein hormones alpha chain isoform X1

    UniProtKB/TrEMBL
    F1NJD3
    Conserved Domains (1) summary
    pfam00236
    Location:32 → 120
    Hormone_6; Glycoprotein hormone

  3. XM_040697178.1 → XP_040553112.1  glycoprotein hormones alpha chain isoform X1

    UniProtKB/TrEMBL
    F1NJD3
    Related
    ENSGALP00010005226.1, ENSGALT00010008882.1
    Conserved Domains (1) summary
    pfam00236
    Location:32 → 120
    Hormone_6; Glycoprotein hormone

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    76071266..76092987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046914098.1 → XP_046770054.1  glycoprotein hormones alpha chain isoform X1

    UniProtKB/TrEMBL
    F1NJD3

  2. XM_046914099.1 → XP_046770055.1  glycoprotein hormones alpha chain isoform X1

    UniProtKB/TrEMBL
    F1NJD3

  3. XM_046914100.1 → XP_046770056.1  glycoprotein hormones alpha chain isoform X1

    UniProtKB/TrEMBL
    F1NJD3
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.