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NPHP1 nephrocystin 1 [ Gallus gallus (chicken) ]

Gene ID: 421223, updated on 13-Apr-2026
Symbol
NPHP1provided by CGNC
Full Name
nephrocystin 1provided by CGNC
Primary source
CGNC:6212
See related
Ensembl:ENSGALG00010016980
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
nephrocystin-1
Orthologs
all
Try the new Gene page
Try the new Transcripts and proteins table
See NPHP1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
20
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 3 NC_052534.1 (3250166..3269482, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 3 NC_052575.1 (3173876..3193207, complement)

Chromosome 3 - NC_052534.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box containing 3 Neighboring gene ChaC cation transport regulator homolog 2 Neighboring gene mal, T cell differentiation protein like Neighboring gene two-pore calcium channel 3 Neighboring gene mitoregulin Neighboring gene BUB1 mitotic checkpoint serine/threonine kinase Neighboring gene uncharacterized LOC121110243

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization involved in establishment of planar polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
nephrocystin-1
Names
nephronophthisis 1 (juvenile)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199429.3 → NP_001186358.1  nephrocystin-1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000060
    UniProtKB/TrEMBL
    E1C5D4
    Related
    ENSGALP00010023964.1, ENSGALT00010041000.1
    Conserved Domains (1) summary
    cd11770
    Location:163 → 216
    SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052534.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3250166..3269482 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025148629.3 → XP_025004397.1  nephrocystin-1 isoform X5

    Conserved Domains (1) summary
    cl17036
    Location:163 → 219
    SH3; Src Homology 3 domain superfamily

  2. XM_015283360.4 → XP_015138846.1  nephrocystin-1 isoform X4

    Conserved Domains (1) summary
    cl17036
    Location:163 → 219
    SH3; Src Homology 3 domain superfamily

  3. XM_015283361.4 → XP_015138847.1  nephrocystin-1 isoform X6

    Conserved Domains (1) summary
    cd11770
    Location:163 → 216
    SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

  4. XM_015283359.4 → XP_015138845.1  nephrocystin-1 isoform X3

    Conserved Domains (1) summary
    cd11770
    Location:163 → 216
    SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

  5. XM_015283357.4 → XP_015138843.1  nephrocystin-1 isoform X1

    Conserved Domains (1) summary
    cd11770
    Location:163 → 216
    SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

  6. XM_015283358.4 → XP_015138844.1  nephrocystin-1 isoform X2

    Conserved Domains (1) summary
    cd11770
    Location:163 → 216
    SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052575.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3173876..3193207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046913535.1 → XP_046769491.1  nephrocystin-1 isoform X5

  2. XM_046913534.1 → XP_046769490.1  nephrocystin-1 isoform X4

  3. XM_046913536.1 → XP_046769492.1  nephrocystin-1 isoform X6

  4. XM_046913533.1 → XP_046769489.1  nephrocystin-1 isoform X3

  5. XM_046913531.1 → XP_046769487.1  nephrocystin-1 isoform X1

  6. XM_046913532.1 → XP_046769488.1  nephrocystin-1 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

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