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SS18 SS18, nBAF chromatin remodeling complex subunit [ Gallus gallus (chicken) ]

Gene ID: 421085, updated on 16-Jun-2026
Symbol
SS18provided by CGNC
Full Name
SS18, nBAF chromatin remodeling complex subunitprovided by CGNC
Primary source
CGNC:11249
See related
Ensembl:ENSGALG00010005508
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
all
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Try the new Transcripts and proteins table
See SS18 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (103703503..103746316, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (103768033..103810839, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 521 Neighboring gene uncharacterized LOC107052003 Neighboring gene microRNA 1597 Neighboring gene TATA-box binding protein associated factor 4b Neighboring gene uncharacterized LOC107056037 Neighboring gene potassium channel tetramerization domain containing 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein SSXT
Names
synovial sarcoma translocation, chromosome 18

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079479.3 → NP_001072947.1  protein SSXT isoform 2

    See identical proteins and their annotated locations for NP_001072947.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks two in-frame exons, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    JAENSK010000043
    UniProtKB/TrEMBL
    A0A8V0XM17, Q5ZMA8
    Related
    ENSGALP00010007733.1, ENSGALT00010013171.1
    Conserved Domains (2) summary
    TIGR01628
    Location:178 → 267
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam05030
    Location:14 → 73
    SSXT; SSXT protein (N-terminal region)

  2. NM_001278150.2 → NP_001265079.2  protein SSXT isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    JAENSK010000043
    UniProtKB/TrEMBL
    A0A1D5PFT4
    Related
    ENSGALP00010007730.1, ENSGALT00010013168.1
    Conserved Domains (2) summary
    TIGR01628
    Location:163 → 283
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam05030
    Location:14 → 73
    SSXT; SSXT protein (N-terminal region)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    103703503..103746316 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015277944.4 → XP_015133430.1  protein SSXT isoform X4

    Conserved Domains (2) summary
    TIGR01628
    Location:89 → 209
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam11593
    Location:1 → 143
    Med3; Mediator complex subunit 3 fungal

  2. XM_046925181.1 → XP_046781137.1  protein SSXT isoform X3

    UniProtKB/TrEMBL
    A0A8V0XPC6
    Related
    ENSGALP00010007731.1, ENSGALT00010013169.1

  3. XM_015277943.4 → XP_015133429.1  protein SSXT isoform X2

    UniProtKB/TrEMBL
    A0A1D5PX83
    Related
    ENSGALP00010007734.1, ENSGALT00010013172.1
    Conserved Domains (2) summary
    TIGR01628
    Location:163 → 283
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    pfam05030
    Location:14 → 73
    SSXT; SSXT protein (N-terminal region)

  4. XM_046925191.1 → XP_046781147.1  protein SSXT isoform X4

  5. XM_046925179.1 → XP_046781135.1  protein SSXT isoform X1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    103768033..103810839 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046911555.1 → XP_046767511.1  protein SSXT isoform X4

  2. XM_046911554.1 → XP_046767510.1  protein SSXT isoform X3

    UniProtKB/TrEMBL
    A0A8V0XPC6

  3. XM_046911553.1 → XP_046767509.1  protein SSXT isoform X2

    UniProtKB/TrEMBL
    A0A1D5PX83
Nucleotide Protein Strain
Heading Accession and Version

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