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SPAG6 sperm associated antigen 6 [ Gallus gallus (chicken) ]

Gene ID: 420505, updated on 6-Nov-2021

Summary

Official Symbol
SPAG6provided by CGNC
Official Full Name
sperm associated antigen 6provided by CGNC
Primary source
CGNC:5970
See related
Ensembl:ENSGALG00000007892
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
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Genomic context

See SPAG6 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
105 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (17601772..17639026, complement)
105 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.1) 2 NC_052574.1 (17632317..17664844, complement)
104 previous assembly GRCg6a (GCF_000002315.5) 2 NC_006089.5 (17682386..17731271, complement)
103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 2 NC_006089.4 (17708283..17743643, complement)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-5-phosphate 4-kinase type 2 alpha Neighboring gene uncharacterized LOC112531962 Neighboring gene microRNA mir-12240 Neighboring gene BMI1 proto-oncogene, polycomb ring finger Neighboring gene COMM domain containing 3

Genomic regions, transcripts, and products

General gene information

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199586.2NP_001186515.2  sperm-associated antigen 6

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000036
    Related
    ENSGALP00000012801.5, ENSGALT00000012816.6
    Conserved Domains (3) summary
    COG5064
    Location:81415
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00044
    Location:289325
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:120152
    ARM; armadillo repeat [structural motif]

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 105 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    17601772..17639026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040680802.1XP_040536736.1  sperm-associated antigen 6 isoform X2

    Conserved Domains (3) summary
    COG5064
    Location:174459
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00044
    Location:383406
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:215247
    ARM; armadillo repeat [structural motif]
  2. XM_025147182.2XP_025002950.1  sperm-associated antigen 6 isoform X1

    Conserved Domains (3) summary
    sd00044
    Location:384420
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:215247
    ARM; armadillo repeat [structural motif]
    cl25709
    Location:176510
    Arm_3; Atypical Arm repeat
  3. XM_040680805.1XP_040536739.1  sperm-associated antigen 6 isoform X5

    Conserved Domains (3) summary
    COG5064
    Location:11358
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00044
    Location:288311
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:120152
    ARM; armadillo repeat [structural motif]
  4. XM_015281383.3XP_015136869.1  sperm-associated antigen 6 isoform X4

    UniProtKB/TrEMBL
    R4GHN6
    Conserved Domains (3) summary
    COG5064
    Location:74408
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00044
    Location:282318
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:113145
    ARM; armadillo repeat [structural motif]
  5. XM_040680804.1XP_040536738.1  sperm-associated antigen 6 isoform X4

    Conserved Domains (3) summary
    COG5064
    Location:74408
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00044
    Location:282318
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:113145
    ARM; armadillo repeat [structural motif]
  6. XM_040680803.1XP_040536737.1  sperm-associated antigen 6 isoform X3

    Conserved Domains (3) summary
    COG5064
    Location:99433
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00044
    Location:307343
    HEAT; HEAT repeat [structural motif]
    sd00043
    Location:138170
    ARM; armadillo repeat [structural motif]

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    17632317..17664844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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