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GATAD2A GATA zinc finger domain containing 2A [ Gallus gallus (chicken) ]

Gene ID: 420109, updated on 3-Dec-2024
Symbol
GATAD2Aprovided by CGNC
Full Name
GATA zinc finger domain containing 2Aprovided by CGNC
Primary source
CGNC:2116
See related
Ensembl:ENSGALG00010028516
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Location:
chromosome: 28
Exon count:
19
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 28 NC_052559.1 (3903059..3947011, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 28 NC_052600.1 (3465634..3509547, complement)

Chromosome 28 - NC_052559.1Genomic Context describing neighboring genes Neighboring gene YjeF N-terminal domain containing 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit A13 Neighboring gene uncharacterized LOC124417440 Neighboring gene MAU2 sister chromatid cohesion factor Neighboring gene SURP and G-patch domain containing 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. An expressed sequence tag analysis of the chicken reproductive tract transcriptome. Froman DP, et al. Poult Sci, 2006 Aug. PMID 16903475
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of NuRD complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
transcriptional repressor p66-alpha
Names
p66 alpha

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012552.2 → NP_001012570.2  transcriptional repressor p66-alpha

    Status: VALIDATED

    Source sequence(s)
    AJ851822, CR391510, DT658852
    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:383 → 417
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052559.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3903059..3947011 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040653540.2 → XP_040509474.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328
    Related
    ENSGALP00010042508.1, ENSGALT00010069066.1
    Conserved Domains (2) summary
    pfam00320
    Location:383 → 417
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  2. XM_046904580.1 → XP_046760536.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328

  3. XM_040653544.2 → XP_040509478.1  transcriptional repressor p66-alpha isoform X4

    UniProtKB/TrEMBL
    Q5F328

  4. XM_015300046.4 → XP_015155532.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:383 → 417
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  5. XM_040653538.2 → XP_040509472.1  transcriptional repressor p66-alpha isoform X2

    UniProtKB/TrEMBL
    Q5F328

  6. XM_015300042.4 → XP_015155528.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328
    Related
    ENSGALP00010042507.1, ENSGALT00010069065.1
    Conserved Domains (2) summary
    pfam00320
    Location:413 → 447
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  7. XM_040653539.2 → XP_040509473.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:383 → 417
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  8. XM_015300044.4 → XP_015155530.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:413 → 447
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  9. XM_046904581.1 → XP_046760537.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328

  10. XM_025144273.3 → XP_025000041.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:383 → 417
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  11. XM_015300043.4 → XP_015155529.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:413 → 447
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  12. XM_040653541.2 → XP_040509475.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:383 → 417
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  13. XM_040653536.2 → XP_040509470.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:413 → 447
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  14. XM_040653543.2 → XP_040509477.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:383 → 417
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  15. XM_040653535.2 → XP_040509469.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:413 → 447
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  16. XM_040653537.2 → XP_040509471.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:413 → 447
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  17. XM_025144272.3 → XP_025000040.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:413 → 447
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  18. XM_040653542.2 → XP_040509476.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:383 → 417
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

  19. XM_015300045.4 → XP_015155531.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328
    Conserved Domains (2) summary
    pfam00320
    Location:413 → 447
    GATA; GATA zinc finger
    pfam16563
    Location:134 → 170
    P66_CC; Coiled-coil and interaction region of P66A and P66B with MBD2

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052600.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3465634..3509547 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046933800.1 → XP_046789756.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328

  2. XM_046933793.1 → XP_046789749.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328

  3. XM_046933804.1 → XP_046789760.1  transcriptional repressor p66-alpha isoform X4

    UniProtKB/TrEMBL
    Q5F328

  4. XM_046933797.1 → XP_046789753.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328

  5. XM_046933796.1 → XP_046789752.1  transcriptional repressor p66-alpha isoform X2

    UniProtKB/TrEMBL
    Q5F328

  6. XM_046933787.1 → XP_046789743.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328

  7. XM_046933803.1 → XP_046789759.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328

  8. XM_046933791.1 → XP_046789747.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328

  9. XM_046933799.1 → XP_046789755.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328

  10. XM_046933788.1 → XP_046789744.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328

  11. XM_046933798.1 → XP_046789754.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328

  12. XM_046933790.1 → XP_046789746.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328

  13. XM_046933801.1 → XP_046789757.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328

  14. XM_046933792.1 → XP_046789748.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328

  15. XM_046933794.1 → XP_046789750.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328

  16. XM_046933795.1 → XP_046789751.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328

  17. XM_046933802.1 → XP_046789758.1  transcriptional repressor p66-alpha isoform X3

    UniProtKB/TrEMBL
    A0A1D5PG96, Q5F328

  18. XM_046933789.1 → XP_046789745.1  transcriptional repressor p66-alpha isoform X1

    UniProtKB/TrEMBL
    A0A1D5PFQ6, Q5F328
Nucleotide Protein Strain
Heading Accession and Version

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