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VPS13D vacuolar protein sorting 13 homolog D [ Gallus gallus (chicken) ]

Gene ID: 419481, updated on 13-Apr-2026
Official Symbol
VPS13Dprovided by CGNC
Official Full Name
vacuolar protein sorting 13 homolog Dprovided by CGNC
Primary source
CGNC:3155
See related
Ensembl:ENSGALG00010021092
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
all
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See VPS13D in Genome Data Viewer
Location:
chromosome: 21
Exon count:
70
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 21 NC_052552.1 (5355270..5444026, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 21 NC_052593.1 (5389320..5478136, complement)

Chromosome 21 - NC_052552.1Genomic Context describing neighboring genes Neighboring gene dehydrogenase/reductase 3 Neighboring gene arylacetamide deacetylase like 4B Neighboring gene arylacetamide deacetylase like 4A Neighboring gene uncharacterized LOC112530144 Neighboring gene TNF receptor superfamily member 1B Neighboring gene TNF receptor superfamily member 8

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrion organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein retention in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein targeting to vacuole IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extrinsic component of membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
vacuolar protein sorting-associated protein 13D
Names
vacuolar protein sorting 13D

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052552.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    5355270..5444026 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040651395.2 → XP_040507329.1  vacuolar protein sorting-associated protein 13D isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZHH0
    Conserved Domains (2) summary
    COG5043
    Location:1 → 1020
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    cd14306
    Location:2642 → 2677
    UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins

  2. XM_025142588.3 → XP_024998356.2  vacuolar protein sorting-associated protein 13D isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZHH0
    Conserved Domains (2) summary
    COG5043
    Location:1 → 1020
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    cd14306
    Location:2642 → 2677
    UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins

  3. XM_040651394.2 → XP_040507328.1  vacuolar protein sorting-associated protein 13D isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZHH0
    Related
    ENSGALP00010030248.1, ENSGALT00010051057.1
    Conserved Domains (2) summary
    COG5043
    Location:1 → 1020
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    cd14306
    Location:2643 → 2678
    UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins

  4. XM_040651392.2 → XP_040507326.1  vacuolar protein sorting-associated protein 13D isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZAE9, A0A8V0ZHH0
    Related
    ENSGALP00010030255.1, ENSGALT00010051064.1
    Conserved Domains (2) summary
    COG5043
    Location:1 → 1020
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    cd14306
    Location:2643 → 2678
    UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins

  5. XM_040651393.2 → XP_040507327.1  vacuolar protein sorting-associated protein 13D isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZAE9, A0A8V0ZHH0
    Conserved Domains (2) summary
    COG5043
    Location:1 → 1020
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    cd14306
    Location:2643 → 2678
    UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052593.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    5389320..5478136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040689225.2 → XP_040545159.1  vacuolar protein sorting-associated protein 13D isoform X4

    UniProtKB/TrEMBL
    A0A8V0ZHH0
    Conserved Domains (2) summary
    COG5043
    Location:1 → 1020
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    cd14306
    Location:2642 → 2677
    UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins

  2. XM_040689223.2 → XP_040545157.1  vacuolar protein sorting-associated protein 13D isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZHH0
    Conserved Domains (2) summary
    COG5043
    Location:1 → 1020
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    cd14306
    Location:2642 → 2677
    UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins

  3. XM_040689224.2 → XP_040545158.1  vacuolar protein sorting-associated protein 13D isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZHH0
    Conserved Domains (2) summary
    COG5043
    Location:1 → 1020
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    cd14306
    Location:2643 → 2678
    UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins

  4. XM_040689221.2 → XP_040545155.1  vacuolar protein sorting-associated protein 13D isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZHH0
    Conserved Domains (2) summary
    COG5043
    Location:1 → 1020
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    cd14306
    Location:2643 → 2678
    UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins

  5. XM_040689222.2 → XP_040545156.1  vacuolar protein sorting-associated protein 13D isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZHH0
    Conserved Domains (2) summary
    COG5043
    Location:1 → 1020
    MRS6; Vacuolar protein sorting-associated protein [Intracellular trafficking and secretion]
    cd14306
    Location:2643 → 2678
    UBA_VP13D; UBA domain found in vacuolar protein sorting-associated protein 13D (VP13D) and similar proteins

RNA

  1. XR_005855646.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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