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RERE arginine-glutamic acid dipeptide repeats [ Gallus gallus (chicken) ]

Gene ID: 419435, updated on 17-Aug-2024
Symbol
REREprovided by CGNC
Full Name
arginine-glutamic acid dipeptide repeatsprovided by CGNC
Primary source
CGNC:1596
See related
Ensembl:ENSGALG00010017344
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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See RERE in Genome Data Viewer
Location:
chromosome: 21
Exon count:
31
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 21 NC_052552.1 (3029344..3197459, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 21 NC_052593.1 (3062769..3230938, complement)

Chromosome 21 - NC_052552.1Genomic Context describing neighboring genes Neighboring gene NOC2 like nucleolar associated transcriptional repressor Neighboring gene sterile alpha motif domain containing 11 Neighboring gene uncharacterized LOC112530147 Neighboring gene enolase 1, (alpha) Neighboring gene solute carrier family 2 member 5 Neighboring gene carbonic anhydrase 6

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
arginine-glutamic acid dipeptide repeats protein
Names
arginine-glutamic acid dipeptide (RE) repeats

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052552.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3029344..3197459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015297140.4 → XP_015152626.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4
    Conserved Domains (5) summary
    cd11661
    Location:353 → 398
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:461 → 510
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:102 → 265
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:244 → 294
    ELM2; ELM2 domain
    pfam03154
    Location:526 → 1524
    Atrophin-1; Atrophin-1 family

  2. XM_046903256.1 → XP_046759212.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4

  3. XM_040651326.2 → XP_040507260.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4
    Conserved Domains (5) summary
    cd11661
    Location:353 → 398
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:461 → 510
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:102 → 265
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:244 → 294
    ELM2; ELM2 domain
    pfam03154
    Location:526 → 1524
    Atrophin-1; Atrophin-1 family

  4. XM_040651325.2 → XP_040507259.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4
    Conserved Domains (5) summary
    cd11661
    Location:353 → 398
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:461 → 510
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:102 → 265
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:244 → 294
    ELM2; ELM2 domain
    pfam03154
    Location:526 → 1524
    Atrophin-1; Atrophin-1 family

  5. XM_046903257.1 → XP_046759213.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4

  6. XM_025142648.3 → XP_024998416.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4
    Conserved Domains (5) summary
    cd11661
    Location:353 → 398
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:461 → 510
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:102 → 265
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:244 → 294
    ELM2; ELM2 domain
    pfam03154
    Location:526 → 1524
    Atrophin-1; Atrophin-1 family

  7. XM_046903258.1 → XP_046759214.1  arginine-glutamic acid dipeptide repeats protein isoform X2

  8. XM_015297141.4 → XP_015152627.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4
    Related
    ENSGALP00010024452.1, ENSGALT00010041817.1
    Conserved Domains (5) summary
    cd11661
    Location:353 → 398
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:461 → 510
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:102 → 265
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:244 → 294
    ELM2; ELM2 domain
    pfam03154
    Location:526 → 1524
    Atrophin-1; Atrophin-1 family

  9. XM_046903255.1 → XP_046759211.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4

  10. XM_040651327.2 → XP_040507261.1  arginine-glutamic acid dipeptide repeats protein isoform X4

    Conserved Domains (3) summary
    cd11661
    Location:77 → 122
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:185 → 234
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    PHA03247
    Location:222 → 746
    PHA03247; large tegument protein UL36; Provisional

  11. XM_015297144.4 → XP_015152630.1  arginine-glutamic acid dipeptide repeats protein isoform X3

    Conserved Domains (5) summary
    cd11661
    Location:127 → 172
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:235 → 284
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    pfam01448
    Location:18 → 68
    ELM2; ELM2 domain
    pfam03154
    Location:300 → 1298
    Atrophin-1; Atrophin-1 family
    cl02608
    Location:9 → 39
    BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052593.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3062769..3230938 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040689101.2 → XP_040545035.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4
    Conserved Domains (5) summary
    cd11661
    Location:353 → 398
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:461 → 510
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:102 → 265
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:244 → 294
    ELM2; ELM2 domain
    pfam03154
    Location:526 → 1524
    Atrophin-1; Atrophin-1 family

  2. XM_046931460.1 → XP_046787416.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4

  3. XM_040689105.2 → XP_040545039.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4
    Conserved Domains (5) summary
    cd11661
    Location:353 → 398
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:461 → 510
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:102 → 265
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:244 → 294
    ELM2; ELM2 domain
    pfam03154
    Location:526 → 1524
    Atrophin-1; Atrophin-1 family

  4. XM_040689104.2 → XP_040545038.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4
    Conserved Domains (5) summary
    cd11661
    Location:353 → 398
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:461 → 510
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:102 → 265
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:244 → 294
    ELM2; ELM2 domain
    pfam03154
    Location:526 → 1524
    Atrophin-1; Atrophin-1 family

  5. XM_046931461.1 → XP_046787417.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4

  6. XM_040689102.2 → XP_040545036.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4
    Conserved Domains (5) summary
    cd11661
    Location:353 → 398
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:461 → 510
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:102 → 265
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:244 → 294
    ELM2; ELM2 domain
    pfam03154
    Location:526 → 1524
    Atrophin-1; Atrophin-1 family

  7. XM_046931462.1 → XP_046787418.1  arginine-glutamic acid dipeptide repeats protein isoform X2

  8. XM_040689103.2 → XP_040545037.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4
    Conserved Domains (5) summary
    cd11661
    Location:353 → 398
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:461 → 510
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    cd04709
    Location:102 → 265
    BAH_MTA; BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH ...
    pfam01448
    Location:244 → 294
    ELM2; ELM2 domain
    pfam03154
    Location:526 → 1524
    Atrophin-1; Atrophin-1 family

  9. XM_046931459.1 → XP_046787415.1  arginine-glutamic acid dipeptide repeats protein isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z1Z4

  10. XM_040689108.2 → XP_040545042.1  arginine-glutamic acid dipeptide repeats protein isoform X4

    Conserved Domains (3) summary
    cd11661
    Location:77 → 122
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:185 → 234
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    PHA03247
    Location:222 → 746
    PHA03247; large tegument protein UL36; Provisional

  11. XM_040689107.2 → XP_040545041.1  arginine-glutamic acid dipeptide repeats protein isoform X3

    Conserved Domains (5) summary
    cd11661
    Location:127 → 172
    SANT_MTA3_like; Myb-Like Dna-Binding Domain of MTA3 and related proteins
    smart00401
    Location:235 → 284
    ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    pfam01448
    Location:18 → 68
    ELM2; ELM2 domain
    pfam03154
    Location:300 → 1298
    Atrophin-1; Atrophin-1 family
    cl02608
    Location:9 → 39
    BAH; or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in ...
Nucleotide Protein Strain
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