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MMP23A matrix metallopeptidase 23A (pseudogene) [ Gallus gallus (chicken) ]

Gene ID: 419407, updated on 19-May-2023

Summary

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Symbol
MMP23Aprovided by CGNC
Full Name
matrix metallopeptidase 23A (pseudogene)provided by CGNC
Primary source
CGNC:50988
See related
Ensembl:ENSGALG00010020187
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
MMP23B
Orthologs
human mouse all
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Genomic context

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See MMP23A in Genome Data Viewer
Location:
chromosome: 21
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 21 NC_052552.1 (2022547..2039651, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 21 NC_052593.1 (2049978..2071168, complement)

Chromosome 21 - NC_052552.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC419404 Neighboring gene solute carrier family 35 member E2B Neighboring gene cell division cycle 2-like 1 (PITSLRE proteins) Neighboring gene mindbomb E3 ubiquitin protein ligase 2 Neighboring gene Golgi integral membrane protein 4-like Neighboring gene fibronectin type III domain containing 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

General protein information

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Preferred Names
matrix metalloproteinase-23
Names
matrix metallopeptidase 23B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052552.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2022547..2039651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025142634.3 → XP_024998402.2  matrix metalloproteinase-23 isoform X3

    Conserved Domains (4) summary
    smart00254
    Location:221 → 255
    ShKT; ShK toxin domain
    cd04278
    Location:53 → 220
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
    cd00096
    Location:283 → 287
    Ig; Ig strand B [structural motif]
    cl11960
    Location:275 → 343
    Ig; Immunoglobulin domain

  2. XM_004947398.5 → XP_004947455.2  matrix metalloproteinase-23 isoform X2

    Conserved Domains (4) summary
    smart00254
    Location:231 → 265
    ShKT; ShK toxin domain
    cd04278
    Location:63 → 230
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
    cd00096
    Location:292 → 298
    Ig; Ig strand B [structural motif]
    cl11960
    Location:285 → 353
    Ig; Immunoglobulin domain

  3. XM_417569.6 → XP_417569.2  matrix metalloproteinase-23 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZJP5
    Related
    ENSGALP00010028823.1, ENSGALT00010048760.1
    Conserved Domains (4) summary
    smart00254
    Location:265 → 299
    ShKT; ShK toxin domain
    cd04278
    Location:97 → 264
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
    cd00096
    Location:326 → 332
    Ig; Ig strand B [structural motif]
    cl11960
    Location:319 → 387
    Ig; Immunoglobulin domain

RNA

  1. XR_006931969.1 RNA Sequence

  2. XR_006931968.1 RNA Sequence

  3. XR_213526.5 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052593.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2049978..2071168 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040689057.2 → XP_040544991.1  matrix metalloproteinase-23 isoform X3

    Conserved Domains (4) summary
    smart00254
    Location:221 → 255
    ShKT; ShK toxin domain
    cd04278
    Location:53 → 220
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
    cd00096
    Location:282 → 288
    Ig; Ig strand B [structural motif]
    cl11960
    Location:275 → 343
    Ig; Immunoglobulin domain

  2. XM_040689056.2 → XP_040544990.1  matrix metalloproteinase-23 isoform X2

    Conserved Domains (4) summary
    smart00254
    Location:231 → 265
    ShKT; ShK toxin domain
    cd04278
    Location:63 → 230
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
    cd00096
    Location:292 → 298
    Ig; Ig strand B [structural motif]
    cl11960
    Location:285 → 353
    Ig; Immunoglobulin domain

  3. XM_040689055.2 → XP_040544989.1  matrix metalloproteinase-23 isoform X1

    Conserved Domains (4) summary
    smart00254
    Location:265 → 299
    ShKT; ShK toxin domain
    cd04278
    Location:97 → 264
    ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
    cd00096
    Location:326 → 332
    Ig; Ig strand B [structural motif]
    cl11960
    Location:319 → 387
    Ig; Immunoglobulin domain

RNA

  1. XR_006936872.1 RNA Sequence

  2. XR_006936870.1 RNA Sequence

  3. XR_005855580.2 RNA Sequence

  4. XR_006936871.1 RNA Sequence

  5. XR_006936869.1 RNA Sequence

  6. XR_005855579.2 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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