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GABPA GA binding protein transcription factor alpha subunit [ Gallus gallus (chicken) ]

Gene ID: 418478, updated on 3-Apr-2024

Summary

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Symbol
GABPAprovided by CGNC
Full Name
GA binding protein transcription factor alpha subunitprovided by CGNC
Primary source
CGNC:11756
See related
Ensembl:ENSGALG00010010887
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (102651620..102681746)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (102738795..102768838)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L39 Neighboring gene junctional adhesion molecule 2 Neighboring gene ATP synthase, H+ transporting, mitochondrial Fo complex subunit F6 Neighboring gene amyloid beta precursor protein Neighboring gene cysteine and tyrosine rich 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GA-binding protein alpha chain
Names
GA binding protein transcription factor subunit alpha
GA binding protein transcription factor, alpha subunit 60kDa
human nuclear respiratory factor-2 subunit alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001007858.1 → NP_001007859.1  GA-binding protein alpha chain

    See identical proteins and their annotated locations for NP_001007859.1

    Status: PROVISIONAL

    Source sequence(s)
    AJ720588
    UniProtKB/TrEMBL
    Q5DWF6, Q5ZJ46
    Related
    ENSGALP00010014704.1, ENSGALT00010026064.1
    Conserved Domains (3) summary
    cd08534
    Location:168 → 254
    SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
    smart00413
    Location:320 → 404
    ETS; erythroblast transformation specific domain
    pfam11620
    Location:40 → 119
    GABP-alpha; GA-binding protein alpha chain

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    102651620..102681746
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015299140.4 → XP_015154626.1  GA-binding protein alpha chain isoform X1

    UniProtKB/TrEMBL
    Q5DWF6, Q5ZJ46
    Conserved Domains (3) summary
    cd08534
    Location:168 → 254
    SAM_PNT-GABP-alpha; Sterile alpha motif (SAM)/Pointed domain of GA-binding protein (GABP) alpha chain
    smart00413
    Location:320 → 404
    ETS; erythroblast transformation specific domain
    pfam11620
    Location:40 → 119
    GABP-alpha; GA-binding protein alpha chain

  2. XM_046940249.1 → XP_046796205.1  GA-binding protein alpha chain isoform X1

    UniProtKB/TrEMBL
    Q5ZJ46

  3. XM_046940260.1 → XP_046796216.1  GA-binding protein alpha chain isoform X1

    UniProtKB/TrEMBL
    Q5ZJ46

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    102738795..102768838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046907883.1 → XP_046763839.1  GA-binding protein alpha chain isoform X1

    UniProtKB/TrEMBL
    Q5ZJ46

  2. XM_046907885.1 → XP_046763841.1  GA-binding protein alpha chain isoform X1

    UniProtKB/TrEMBL
    Q5ZJ46

  3. XM_046907884.1 → XP_046763840.1  GA-binding protein alpha chain isoform X1

    UniProtKB/TrEMBL
    Q5ZJ46
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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