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USP41 ubiquitin specific peptidase 41 [ Gallus gallus (chicken) ]

Gene ID: 418167, updated on 5-Mar-2024

Summary

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Official Symbol
USP41provided by CGNC
Official Full Name
ubiquitin specific peptidase 41provided by CGNC
Primary source
CGNC:50688
See related
Ensembl:ENSGALG00010012633
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
USP18
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (62128809..62142748)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (62450585..62464531)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene tubulin alpha 8B Neighboring gene tubulin alpha 8A Neighboring gene uncharacterized LOC107053357 Neighboring gene uncharacterized LOC107053352 Neighboring gene aldo-keto reductase family 1, member B10 (aldose reductase)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Replication of a low-pathogenic avian influenza virus is enhanced by chicken ubiquitin-specific protease 18. Tanikawa T, et al. J Gen Virol, 2017 Sep. PMID 28825532

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. USP18 significantly enhanced the replication of a low-pathogenic avian influenza virus.
    Title: Replication of a low-pathogenic avian influenza virus is enhanced by chicken ubiquitin-specific protease 18.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubl carboxyl-terminal hydrolase 18
Names
ubiquitin specific peptidase 18
ubiquitin specific protease 18
XP_004938015.2
XP_040514273.1
XP_040514274.1
XP_416398.4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    62128809..62142748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004937958.5 → XP_004938015.2  ubl carboxyl-terminal hydrolase 18 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YN52
    Related
    ENSGALP00010017549.1, ENSGALT00010030245.1
    Conserved Domains (1) summary
    cd02257
    Location:109 → 422
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

  2. XM_416398.7 → XP_416398.4  ubl carboxyl-terminal hydrolase 18 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YA03, A0A8V0YGA8
    Related
    ENSGALP00010017553.1, ENSGALT00010030256.1
    Conserved Domains (1) summary
    cd02257
    Location:61 → 374
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    62450585..62464531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040658339.2 → XP_040514273.1  ubl carboxyl-terminal hydrolase 18 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YN52
    Conserved Domains (1) summary
    cd02257
    Location:109 → 422
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...

  2. XM_040658340.2 → XP_040514274.1  ubl carboxyl-terminal hydrolase 18 isoform X2

    UniProtKB/TrEMBL
    A0A224AW78, A0A8V0YGA8
    Conserved Domains (1) summary
    pfam00443
    Location:60 → 373
    UCH; Ubiquitin carboxyl-terminal hydrolase
Nucleotide Protein Strain
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