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IFT27 intraflagellar transport 27 [ Gallus gallus (chicken) ]

Gene ID: 418053, updated on 3-Dec-2024
Symbol
IFT27provided by CGNC
Full Name
intraflagellar transport 27provided by CGNC
Primary source
CGNC:9506
See related
Ensembl:ENSGALG00010014906
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
RABL4
Orthologs
human mouse all
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See IFT27 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (51669442..51693213)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (51963925..51987688)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene cytokine receptor common subunit beta-like Neighboring gene neutrophil cytosolic factor 4 Neighboring gene parvalbumin Neighboring gene calcium voltage-gated channel auxiliary subunit gamma 2 Neighboring gene eukaryotic translation initiation factor 3 subunit D Neighboring gene FAD dependent oxidoreductase domain containing 2

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels. Savolainen P, et al. Cytogenet Genome Res, 2005. PMID 16093725
  2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
intraflagellar transport protein 27 homolog
Names
RAB, member of RAS oncogene family-like 4
intraflagellar transport 27 homolog
NP_001264309.1
NP_001264310.1
XP_046763454.1
XP_046763455.1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277380.2 → NP_001264309.1  intraflagellar transport protein 27 homolog isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer protein (isoform 1).
    Source sequence(s)
    BX934306, HAEK01033272, JAENSK010000012
    UniProtKB/TrEMBL
    A0A1D5PME6, A0A8V0YQ59
    Related
    ENSGALP00010020804.1, ENSGALT00010035866.1
    Conserved Domains (2) summary
    pfam00071
    Location:7 → 186
    Ras; Ras family
    cl21455
    Location:6 → 185
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

  2. NM_001277381.3 → NP_001264310.1  intraflagellar transport protein 27 homolog isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site compared to variant 1. The resulting protein (isoform 2) is shorter compared to isoform 1.
    Source sequence(s)
    HAEK01033272, JAENSK010000012
    UniProtKB/TrEMBL
    A0A8V0YQ59
    Related
    ENSGALP00010020805.1, ENSGALT00010035867.1
    Conserved Domains (2) summary
    pfam00071
    Location:7 → 173
    Ras; Ras family
    cl21455
    Location:6 → 172
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    51669442..51693213
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_005858065.2 RNA Sequence

  2. XR_005858064.2 RNA Sequence

  3. XR_005858066.2 RNA Sequence

  4. XR_001466300.4 RNA Sequence

  5. XR_006938662.1 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    51963925..51987688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046907498.1 → XP_046763454.1  intraflagellar transport protein 27 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8V0YQ59

  2. XM_046907499.1 → XP_046763455.1  intraflagellar transport protein 27 homolog isoform X2

    UniProtKB/TrEMBL
    A0A8V0YQ59

RNA

  1. XR_006932669.1 RNA Sequence

  2. XR_006932668.1 RNA Sequence

  3. XR_006932672.1 RNA Sequence

  4. XR_006932670.1 RNA Sequence

  5. XR_006932671.1 RNA Sequence

  6. XR_006932673.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials