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HBP1 HMG-box transcription factor 1 [ Gallus gallus (chicken) ]

Gene ID: 417705, updated on 17-Aug-2024
Symbol
HBP1provided by CGNC
Full Name
HMG-box transcription factor 1provided by CGNC
Primary source
CGNC:6093
See related
Ensembl:ENSGALG00010009081
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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See HBP1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (14741159..14756466)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (14878660..14893967)

Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma Neighboring gene protein kinase cAMP-dependent type II regulatory subunit beta Neighboring gene component of oligomeric golgi complex 5 Neighboring gene G protein-coupled receptor 22 Neighboring gene uncharacterized LOC112533028 Neighboring gene dihydrouridine synthase 4 like

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Transcription factor HBP1: A regulator of senescence and apoptosis of preadipocytes. Chen H, et al. Biochem Biophys Res Commun, 2019 Sep 17. PMID 31331641
  2. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
  3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. HBP1 promotes the senescence and apoptosis of chicken preadipocytes.
    Title: Transcription factor HBP1: A regulator of senescence and apoptosis of preadipocytes.
Submit: New GeneRIF Correction

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
HMG box-containing protein 1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199454.3 → NP_001186383.1  HMG box-containing protein 1

    Status: PROVISIONAL

    Source sequence(s)
    BI394669, BU254246, BU455142, BU472995, JAENSK010000012
    Conserved Domains (2) summary
    cd01388
    Location:436 → 507
    SOX-TCF_HMG-box; SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and ...
    cl22470
    Location:213 → 339
    AXH; Ataxin-1 and HBP1 module (AXH)

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    14741159..14756466
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015275712.4 → XP_015131198.2  HMG box-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y8L1
    Related
    ENSGALP00010012338.1, ENSGALT00010021641.1
    Conserved Domains (2) summary
    cd01388
    Location:449 → 520
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    cl22470
    Location:226 → 352
    AXH; Ataxin-1 and HBP1 module (AXH)

  2. XM_015275713.4 → XP_015131199.2  HMG box-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y8M1
    Related
    ENSGALP00010012348.1, ENSGALT00010021654.1
    Conserved Domains (2) summary
    cd01388
    Location:444 → 515
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    cl22470
    Location:226 → 347
    AXH; Ataxin-1 and HBP1 module (AXH)

  3. XM_046930715.1 → XP_046786671.1  HMG box-containing protein 1 isoform X3

  4. XM_046930844.1 → XP_046786800.1  HMG box-containing protein 1 isoform X4

  5. XM_046930778.1 → XP_046786734.1  HMG box-containing protein 1 isoform X3

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    14878660..14893967
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046907048.1 → XP_046763004.1  HMG box-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8V0Y8L1

  2. XM_046907049.1 → XP_046763005.1  HMG box-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8V0Y8M1

  3. XM_046907050.1 → XP_046763006.1  HMG box-containing protein 1 isoform X3

  4. XM_046907052.1 → XP_046763008.1  HMG box-containing protein 1 isoform X4

  5. XM_046907051.1 → XP_046763007.1  HMG box-containing protein 1 isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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