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TRIM41 tripartite motif containing 41, MHCB region [ Gallus gallus (chicken) ]

Gene ID: 417043, updated on 1-Mar-2024

Summary

Official Symbol
TRIM41provided by CGNC
Official Full Name
tripartite motif containing 41, MHCB regionprovided by CGNC
Primary source
CGNC:50417
See related
Ensembl:ENSGALG00010002825
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
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Genomic context

See TRIM41 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 16 NC_052547.1 (2140402..2146378)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 16 NC_052588.1 (1041528..1047505)

Chromosome 16 - NC_052547.1Genomic Context describing neighboring genes Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene transfer RNA valine (anticodon CAC) Neighboring gene receptor for activated C kinase 1 Neighboring gene butyrophilin 1, MHCB region

Genomic regions, transcripts, and products

General protein information

Preferred Names
E3 ubiquitin-protein ligase TRIM41
Names
tripartite motif containing 41
tripartite motif containing 41, MHC-B region
tripartite motif protein 41
NP_001025843.1
XP_015150444.1
XP_046784495.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030672.3NP_001025843.1  E3 ubiquitin-protein ligase TRIM41

    See identical proteins and their annotated locations for NP_001025843.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000283
    UniProtKB/TrEMBL
    A0A8V0XEG8, Q5EVY2
    Conserved Domains (3) summary
    cd00021
    Location:213250
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd13741
    Location:419589
    SPRY_PRY_TRIM41; PRY/SPRY domain in tripartite motif-binding protein 41 (TRIM41)
    cl17238
    Location:2654
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052547.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2140402..2146378
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015294958.3XP_015150444.1  E3 ubiquitin-protein ligase TRIM41 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XEG8
    Related
    ENSGALP00010004028.1, ENSGALT00010006548.1
    Conserved Domains (3) summary
    cd00021
    Location:249286
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd13741
    Location:455625
    SPRY_PRY_TRIM41; PRY/SPRY domain in tripartite motif-binding protein 41 (TRIM41)
    cl17238
    Location:2654
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052588.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    1041528..1047505
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046928539.1XP_046784495.1  E3 ubiquitin-protein ligase TRIM41 isoform X1

    UniProtKB/TrEMBL
    A0A8V0XEG8