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CLEC16A C-type lectin domain family 16 member A [ Gallus gallus (chicken) ]

Gene ID: 416632, updated on 3-Dec-2024
Official Symbol
CLEC16Aprovided by CGNC
Official Full Name
C-type lectin domain family 16 member Aprovided by CGNC
Primary source
CGNC:5415
See related
Ensembl:ENSGALG00010019316
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Location:
chromosome: 14
Exon count:
27
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 14 NC_052545.1 (9004621..9067603, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 14 NC_052586.1 (9001521..9064455, complement)

Chromosome 14 - NC_052545.1Genomic Context describing neighboring genes Neighboring gene cytohesin 3 Neighboring gene uncharacterized LOC121106843 Neighboring gene RecQ mediated genome instability 2 Neighboring gene suppressor of cytokine signaling 1 Neighboring gene Dexi homolog Neighboring gene class II major histocompatibility complex transactivator

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Hubbard SJ, et al. Genome Res, 2005 Jan. PMID 15590942, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endolysosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein CLEC16A

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052545.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    9004621..9067603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040647917.2 → XP_040503851.1  protein CLEC16A isoform X5

    UniProtKB/TrEMBL
    A0A8V0Z3L5, A0A8V0ZGW6
    Related
    ENSGALP00010027832.1, ENSGALT00010046741.1

  2. XM_040647915.2 → XP_040503849.1  protein CLEC16A isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z3L5

  3. XM_040647916.2 → XP_040503850.1  protein CLEC16A isoform X4

    UniProtKB/TrEMBL
    A0A8V0Z3L5, A0A8V0ZA80
    Related
    ENSGALP00010027830.1, ENSGALT00010046737.1

  4. XM_015294571.4 → XP_015150057.3  protein CLEC16A isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z3L5

  5. XM_046900874.1 → XP_046756830.1  protein CLEC16A isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z3L5

  6. XM_015294573.4 → XP_015150059.3  protein CLEC16A isoform X7

    UniProtKB/TrEMBL
    A0A8V0Z9G3, A0A8V0ZAY1
    Related
    ENSGALP00010027823.1, ENSGALT00010046722.1

  7. XM_040647918.2 → XP_040503852.1  protein CLEC16A isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZGV8
    Related
    ENSGALP00010027822.1, ENSGALT00010046718.1

  8. XM_015294574.4 → XP_015150060.3  protein CLEC16A isoform X8

    UniProtKB/TrEMBL
    A0A8V0ZAY1
    Related
    ENSGALP00010027819.1, ENSGALT00010046711.1

  9. XM_046900875.1 → XP_046756831.1  protein CLEC16A isoform X7

    UniProtKB/TrEMBL
    A0A8V0Z9G3, A0A8V0ZAY1
    Related
    ENSGALP00010027821.1, ENSGALT00010046715.1

  10. XM_040647919.2 → XP_040503853.1  protein CLEC16A isoform X9

    UniProtKB/TrEMBL
    A0A8V0ZAY1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052586.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    9001521..9064455 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040684084.2 → XP_040540018.1  protein CLEC16A isoform X5

    UniProtKB/TrEMBL
    A0A8V0Z3L5

  2. XM_040684082.2 → XP_040540016.1  protein CLEC16A isoform X2

    UniProtKB/TrEMBL
    A0A8V0Z3L5

  3. XM_040684083.2 → XP_040540017.1  protein CLEC16A isoform X4

    UniProtKB/TrEMBL
    A0A8V0Z3L5

  4. XM_040684081.2 → XP_040540015.1  protein CLEC16A isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z3L5

  5. XM_046927663.1 → XP_046783619.1  protein CLEC16A isoform X3

    UniProtKB/TrEMBL
    A0A8V0Z3L5

  6. XM_040684086.2 → XP_040540020.1  protein CLEC16A isoform X7

    UniProtKB/TrEMBL
    A0A8V0ZAY1

  7. XM_040684085.2 → XP_040540019.1  protein CLEC16A isoform X6

    UniProtKB/TrEMBL
    A0A8V0ZGV8

  8. XM_040684087.2 → XP_040540021.1  protein CLEC16A isoform X8

    UniProtKB/TrEMBL
    A0A8V0ZAY1
    Conserved Domains (1) summary
    pfam09758
    Location:51 → 198
    FPL; Uncharacterized conserved protein

  9. XM_046927664.1 → XP_046783620.1  protein CLEC16A isoform X7

    UniProtKB/TrEMBL
    A0A8V0ZAY1

  10. XM_040684088.2 → XP_040540022.1  protein CLEC16A isoform X9

    UniProtKB/TrEMBL
    A0A8V0ZAY1
Nucleotide Protein Strain
Heading Accession and Version

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