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AFF4 AF4/FMR2 family member 4 [ Gallus gallus (chicken) ]

Gene ID: 416337, updated on 17-Aug-2024

Summary

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Symbol
AFF4provided by CGNC
Full Name
AF4/FMR2 family member 4provided by CGNC
Primary source
CGNC:5383
See related
Ensembl:ENSGALG00010013737
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See AFF4 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
26
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 13 NC_052544.1 (16683115..16732796, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 13 NC_052585.1 (16695216..16744891, complement)

Chromosome 13 - NC_052544.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-12223 Neighboring gene liver enriched antimicrobial peptide 2 Neighboring gene zinc finger CCHC-type containing 10 Neighboring gene uncharacterized LOC121106694

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of super elongation complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AF4/FMR2 family member 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052544.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    16683115..16732796 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004945033.5 → XP_004945090.1  AF4/FMR2 family member 4 isoform X4

    Conserved Domains (1) summary
    pfam05110
    Location:3 → 1131
    AF-4; AF-4 proto-oncoprotein

  2. XM_015294064.4 → XP_015149550.1  AF4/FMR2 family member 4 isoform X3

    Conserved Domains (1) summary
    pfam05110
    Location:3 → 1151
    AF-4; AF-4 proto-oncoprotein

  3. XM_004945032.5 → XP_004945089.1  AF4/FMR2 family member 4 isoform X2

    UniProtKB/TrEMBL
    A0A8V0YLL1
    Related
    ENSGALP00010019496.1, ENSGALT00010032971.1
    Conserved Domains (1) summary
    pfam05110
    Location:3 → 1165
    AF-4; AF-4 proto-oncoprotein

  4. XM_004945030.5 → XP_004945087.1  AF4/FMR2 family member 4 isoform X1

    See identical proteins and their annotated locations for XP_004945087.1

    UniProtKB/TrEMBL
    A0A8V0YL30
    Conserved Domains (2) summary
    pfam05110
    Location:2 → 486
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:906 → 1167
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  5. XM_004945031.5 → XP_004945088.1  AF4/FMR2 family member 4 isoform X1

    See identical proteins and their annotated locations for XP_004945088.1

    UniProtKB/TrEMBL
    A0A8V0YL30
    Related
    ENSGALP00010019493.1, ENSGALT00010032963.1
    Conserved Domains (2) summary
    pfam05110
    Location:2 → 486
    AF-4; AF-4 proto-oncoprotein
    pfam18876
    Location:906 → 1167
    AF-4_C; AF-4 proto-oncoprotein C-terminal region

  6. XM_046900415.1 → XP_046756371.1  AF4/FMR2 family member 4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YL30

  7. XM_046900416.1 → XP_046756372.1  AF4/FMR2 family member 4 isoform X1

    UniProtKB/TrEMBL
    A0A8V0YL30

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052585.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    16695216..16744891 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040683131.2 → XP_040539065.1  AF4/FMR2 family member 4 isoform X4

  2. XM_040683130.2 → XP_040539064.1  AF4/FMR2 family member 4 isoform X3

  3. XM_040683129.2 → XP_040539063.1  AF4/FMR2 family member 4 isoform X2

  4. XM_040683125.2 → XP_040539059.1  AF4/FMR2 family member 4 isoform X1

  5. XM_040683127.2 → XP_040539061.1  AF4/FMR2 family member 4 isoform X1

  6. XM_046927106.1 → XP_046783062.1  AF4/FMR2 family member 4 isoform X1

  7. XM_046927107.1 → XP_046783063.1  AF4/FMR2 family member 4 isoform X1

Nucleotide Protein Strain
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