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SEC13 SEC13 homolog, nuclear pore and COPII coat complex component [ Gallus gallus (chicken) ]

Gene ID: 416119, updated on 6-Jul-2026
Symbol
SEC13provided by CGNC
Full Name
SEC13 homolog, nuclear pore and COPII coat complex componentprovided by CGNC
Primary source
CGNC:6381
See related
Ensembl:ENSGALG00010022642
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
SEC13L1
Orthologs
all
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Try the new Transcripts and proteins table
See SEC13 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
10
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 12 NC_052543.1 (19634968..19642349, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 12 NC_052584.1 (19673192..19680579, complement)

Chromosome 12 - NC_052543.1Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor associated kinase 2 Neighboring gene uncharacterized LOC121106668 Neighboring gene ghrelin/obestatin prepropeptide Neighboring gene cullin associated and neddylation dissociated 2 (putative) Neighboring gene ribosomal protein L32 Neighboring gene methyl-CpG binding domain 4, DNA glycosylase

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. A large database of chicken bursal ESTs as a resource for the analysis of vertebrate gene function. Abdrakhmanov I, et al. Genome Res, 2000 Dec. PMID 11116100, Free PMC Article
  2. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in COPII-coated vesicle budding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of TOR signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of COPII vesicle coat IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore outer ring IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
protein SEC13 homolog
Names
SEC13-like 1

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001277841.2 → NP_001264770.1  protein SEC13 homolog

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000252
    UniProtKB/TrEMBL
    A0A1D5NYF8, A0A8V0ZWR5
    Related
    ENSGALP00010033312.1, ENSGALT00010055088.1
    Conserved Domains (3) summary
    COG2319
    Location:6 → 300
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:61 → 101
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:10 → 288
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052543.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    19634968..19642349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015293127.4 → XP_015148613.1  protein SEC13 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5NYF8, A0A8V0ZWR5
    Related
    ENSGALP00010033314.1, ENSGALT00010055090.1
    Conserved Domains (3) summary
    COG2319
    Location:6 → 300
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:61 → 101
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:10 → 288
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052584.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    19673192..19680579 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046926473.1 → XP_046782429.1  protein SEC13 homolog isoform X1

    UniProtKB/TrEMBL
    A0A1D5NYF8, A0A8V0ZWR5
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials