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CLPX caseinolytic mitochondrial matrix peptidase chaperone subunit [ Gallus gallus (chicken) ]

Gene ID: 415527, updated on 5-Mar-2024

Summary

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Symbol
CLPXprovided by CGNC
Full Name
caseinolytic mitochondrial matrix peptidase chaperone subunitprovided by CGNC
Primary source
CGNC:5510
See related
Ensembl:ENSGALG00010017577
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Annotation information
Annotation category: suggests misassembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
14
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (17747825..17767565)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (17621026..17640762)

Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene proprotein convertase subtilisin/kexin type 6 Neighboring gene pleckstrin homology domain containing O2 Neighboring gene ankyrin repeat and death domain containing 1A Neighboring gene spastic paraplegia 21 (autosomal recessive, Mast syndrome) Neighboring gene programmed cell death 7 Neighboring gene ubiquitin associated protein 1 like Neighboring gene kelch repeat and BTB domain containing 13 Neighboring gene RAS like family 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial
Names
ClpX caseinolytic peptidase X homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030552.2 → NP_001025723.2  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform 1

    Status: VALIDATED

    Source sequence(s)
    AJ448343, AJ455779, AJ455829, AJ719607, AJ731574, BU108067, BU110805, BU372570, DR431437
    UniProtKB/TrEMBL
    F1NA92, Q5ZLX7
    Related
    ENSGALP00010024991.1, ENSGALT00010042501.1
    Conserved Domains (2) summary
    PRK05342
    Location:169 → 605
    clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
    cl02609
    Location:101 → 129
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit

  2. NM_001395921.1 → NP_001382850.1  ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial isoform 2

    Status: VALIDATED

    Source sequence(s)
    AJ448343, AJ455779, AJ455829, AJ719607, AJ731574, BU108067, BU110805, DR431437
    UniProtKB/TrEMBL
    E1BX77, Q5ZLX7
    Related
    ENSGALP00010024986.1, ENSGALT00010042496.1
    Conserved Domains (2) summary
    PRK05342
    Location:169 → 591
    clpX; ATP-dependent Clp protease ATP-binding subunit ClpX
    cl02609
    Location:101 → 129
    Zn-ribbon; C-terminal zinc ribbon domain of RNA polymerase intrinsic transcript cleavage subunit

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    17747825..17767565
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    17621026..17640762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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