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CG5961 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41541, updated on 8-Oct-2018

Summary

Official Symbol
CG5961provided by FlyBase
Primary source
FLYBASE:FBgn0038056
Locus tag
Dmel_CG5961
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG5961; FBXO9

Genomic context

See CG5961 in Genome Data Viewer
Location:
87B11-87B11; 3-52 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.13 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (12458421..12460294, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (8284143..8286016, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene toys are us Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Bibliography

Pathways from BioSystems

General gene information

Homology

  • Homologs of the CG5961 gene: The CG5961 gene is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, mosquito, and frog.

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
ubiquitin-protein transferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
contributes_to ubiquitin-protein transferase activity ISM
Inferred from Sequence Model
more info
 
Component Evidence Code Pubs
SCF ubiquitin ligase complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
SCF ubiquitin ligase complex ISM
Inferred from Sequence Model
more info
 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein
Names
CG5961-PA
CG5961-PB
CG5961-PC

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    12458421..12460294 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001202282.1NP_001189211.1  uncharacterized protein Dmel_CG5961, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001189211.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VG61
    Related
    FBpp0292148, FBtr0303029
    Conserved Domains (2) summary
    pfam12937
    Location:179225
    F-box-like; F-box-like
    cl00299
    Location:74131
    MIT; MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
  2. NM_001300378.1NP_001287307.1  uncharacterized protein Dmel_CG5961, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001287307.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VG61
    Related
    FBpp0309164, FBtr0340187
    Conserved Domains (2) summary
    pfam12937
    Location:179225
    F-box-like; F-box-like
    cl00299
    Location:74131
    MIT; MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
  3. NM_141949.4NP_650206.1  uncharacterized protein Dmel_CG5961, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_650206.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VG61
    Related
    FBpp0082149, FBtr0082681
    Conserved Domains (2) summary
    pfam12937
    Location:179225
    F-box-like; F-box-like
    cl00299
    Location:74131
    MIT; MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar ...
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