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HMG20A high mobility group 20A [ Gallus gallus (chicken) ]

Gene ID: 415346, updated on 3-Dec-2024
Symbol
HMG20Aprovided by CGNC
Full Name
high mobility group 20Aprovided by CGNC
Primary source
CGNC:1982
See related
Ensembl:ENSGALG00010020843
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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See HMG20A in Genome Data Viewer
Location:
chromosome: 10
Exon count:
27
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (2862578..3023835, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (2735373..2897952, complement)

Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 33 Neighboring gene chondroitin sulfate proteoglycan 4 Neighboring gene leucine rich repeat and Ig domain containing 1 Neighboring gene pseudopodium enriched atypical kinase 1 Neighboring gene uncharacterized LOC121111653 Neighboring gene tetraspanin 3 Neighboring gene proline-serine-threonine phosphatase interacting protein 1

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Markers

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Preferred Names
high mobility group protein 20A
Names
HMG box-containing protein 20A

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030394.2 → NP_001025565.2  high mobility group protein 20A

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000245
    UniProtKB/Swiss-Prot
    Q5ZKF4
    Related
    ENSGALP00010029764.1, ENSGALT00010050413.1
    Conserved Domains (1) summary
    cd01390
    Location:104 → 169
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2862578..3023835 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040706287.2 → XP_040562221.1  high mobility group protein 20A isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF4
    Related
    ENSGALP00010029756.1, ENSGALT00010050398.1
    Conserved Domains (1) summary
    cd01390
    Location:104 → 169
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  2. XM_046899004.1 → XP_046754960.1  high mobility group protein 20A isoform X2

    UniProtKB/Swiss-Prot
    Q5ZKF4

  3. XM_015278869.4 → XP_015134355.1  high mobility group protein 20A isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF4
    Related
    ENSGALP00010029762.1, ENSGALT00010050410.1
    Conserved Domains (1) summary
    cd01390
    Location:104 → 169
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  4. XM_040706286.2 → XP_040562220.1  high mobility group protein 20A isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF4
    Conserved Domains (1) summary
    cd01390
    Location:104 → 169
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  5. XM_040706285.2 → XP_040562219.1  high mobility group protein 20A isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF4
    Conserved Domains (1) summary
    cd01390
    Location:104 → 169
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

  6. XM_046899003.1 → XP_046754959.1  high mobility group protein 20A isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF4
    Related
    ENSGALP00010029766.1, ENSGALT00010050419.1

  7. XM_015278871.4 → XP_015134357.1  high mobility group protein 20A isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF4
    Conserved Domains (1) summary
    cd01390
    Location:104 → 169
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...

RNA

  1. XR_005862519.2 RNA Sequence

  2. XR_005862518.2 RNA Sequence

  3. XR_006931004.1 RNA Sequence

  4. XR_005862517.2 RNA Sequence

  5. XR_003076918.3 RNA Sequence

  6. XR_005862536.2 RNA Sequence

  7. XR_005862529.2 RNA Sequence

  8. XR_005862527.2 RNA Sequence

  9. XR_005862520.2 RNA Sequence

  10. XR_005862535.2 RNA Sequence

  11. XR_005862526.2 RNA Sequence

  12. XR_005862525.2 RNA Sequence

  13. XR_006931005.1 RNA Sequence

  14. XR_005862532.2 RNA Sequence

  15. XR_005862539.2 RNA Sequence

  16. XR_005862537.2 RNA Sequence

  17. XR_005862538.2 RNA Sequence

  18. XR_005862530.2 RNA Sequence

  19. XR_005862533.2 RNA Sequence

  20. XR_006931003.1 RNA Sequence

  21. XR_005862523.2 RNA Sequence

  22. XR_005862524.2 RNA Sequence

  23. XR_005862531.2 RNA Sequence

  24. XR_005862522.2 RNA Sequence

  25. XR_005862521.2 RNA Sequence

  26. XR_005862540.2 RNA Sequence

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2735373..2897952 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046924747.1 → XP_046780703.1  high mobility group protein 20A isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF4

  2. XM_046924750.1 → XP_046780706.1  high mobility group protein 20A isoform X2

    UniProtKB/Swiss-Prot
    Q5ZKF4

  3. XM_046924744.1 → XP_046780700.1  high mobility group protein 20A isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF4

  4. XM_046924746.1 → XP_046780702.1  high mobility group protein 20A isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF4

  5. XM_046924745.1 → XP_046780701.1  high mobility group protein 20A isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF4

  6. XM_046924748.1 → XP_046780704.1  high mobility group protein 20A isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF4

  7. XM_046924743.1 → XP_046780699.1  high mobility group protein 20A isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF4

  8. XM_046924749.1 → XP_046780705.1  high mobility group protein 20A isoform X1

    UniProtKB/Swiss-Prot
    Q5ZKF4

RNA

  1. XR_006935680.1 RNA Sequence

  2. XR_006935681.1 RNA Sequence

  3. XR_006935682.1 RNA Sequence

  4. XR_006935677.1 RNA Sequence

  5. XR_006935683.1 RNA Sequence

  6. XR_006935679.1 RNA Sequence

  7. XR_006935678.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5ZKF4.1 GenPept UniProtKB/Swiss-Prot:Q5ZKF4

Gene LinkOut

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