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LINGO1 leucine rich repeat and Ig domain containing 1 [ Gallus gallus (chicken) ]

Gene ID: 415344, updated on 5-Mar-2024

Summary

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Symbol
LINGO1provided by CGNC
Full Name
leucine rich repeat and Ig domain containing 1provided by CGNC
Primary source
CGNC:1953
See related
Ensembl:ENSGALG00010020771
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
LRRN6A; LINGO-1
Orthologs
human mouse all
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Genomic context

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See LINGO1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (2763080..2863017)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (2635694..2735812)

Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 33 Neighboring gene chondroitin sulfate proteoglycan 4 Neighboring gene high mobility group 20A Neighboring gene pseudopodium enriched atypical kinase 1 Neighboring gene uncharacterized LOC121111653 Neighboring gene tetraspanin 3 Neighboring gene proline-serine-threonine phosphatase interacting protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Expression pattern of LINGO-1 in the developing nervous system of the chick embryo. Okafuji T, et al. Gene Expr Patterns, 2005 Dec. PMID 16024296
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The expression of cLINGO-1 in the developing brain and spinal cord of the chick embryo was examined.
    Title: Expression pattern of LINGO-1 in the developing nervous system of the chick embryo.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
Names
cLINGO-1
leucine rich repeat neuronal 6A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024577.2 → NP_001019748.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 precursor

    See identical proteins and their annotated locations for NP_001019748.1

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000245
    UniProtKB/Swiss-Prot
    Q50L44
    Related
    ENSGALP00010029694.1, ENSGALT00010050243.1
    Conserved Domains (5) summary
    TIGR00864
    Location:334 → 414
    PCC; polycystin cation channel protein
    sd00033
    Location:90 → 113
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:113 → 172
    LRR_8; Leucine rich repeat
    cd20969
    Location:416 → 507
    IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
    cd21340
    Location:183 → 364
    PPP1R42; protein phosphatase 1 regulatory subunit 42

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    2763080..2863017
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046898994.1 → XP_046754950.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44
    Related
    ENSGALP00010029692.1, ENSGALT00010050239.1

  2. XM_046898996.1 → XP_046754952.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44
    Related
    ENSGALP00010029696.1, ENSGALT00010050246.1

  3. XM_046898999.1 → XP_046754955.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44
    Related
    ENSGALP00010029680.1, ENSGALT00010050223.1

  4. XM_046898995.1 → XP_046754951.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  5. XM_046898998.1 → XP_046754954.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  6. XM_046899001.1 → XP_046754957.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  7. XM_046898997.1 → XP_046754953.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  8. XM_040706284.2 → XP_040562218.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44
    Conserved Domains (5) summary
    TIGR00864
    Location:334 → 414
    PCC; polycystin cation channel protein
    sd00033
    Location:90 → 113
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:113 → 172
    LRR_8; Leucine rich repeat
    cd20969
    Location:416 → 507
    IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
    cd21340
    Location:183 → 364
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  9. XM_046899000.1 → XP_046754956.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  10. XM_046899002.1 → XP_046754958.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44
    Related
    ENSGALP00010029682.1, ENSGALT00010050225.1

  11. XM_040706282.2 → XP_040562216.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1

    UniProtKB/TrEMBL
    A9DA44
    Conserved Domains (5) summary
    TIGR00864
    Location:340 → 420
    PCC; polycystin cation channel protein
    sd00033
    Location:96 → 119
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:119 → 178
    LRR_8; Leucine rich repeat
    cd20969
    Location:422 → 513
    IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
    cd21340
    Location:189 → 370
    PPP1R42; protein phosphatase 1 regulatory subunit 42

  12. XM_040706283.2 → XP_040562217.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A9DA44
    Conserved Domains (5) summary
    TIGR00864
    Location:340 → 420
    PCC; polycystin cation channel protein
    sd00033
    Location:96 → 119
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:119 → 178
    LRR_8; Leucine rich repeat
    cd20969
    Location:422 → 513
    IgI_Lingo-1; Immunoglobulin I-set domain of the Leucine-rich repeat and immunoglobin-like domain-containing protein 1 (Lingo-1)
    cd21340
    Location:189 → 370
    PPP1R42; protein phosphatase 1 regulatory subunit 42

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    2635694..2735812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046924734.1 → XP_046780690.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  2. XM_046924736.1 → XP_046780692.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  3. XM_046924739.1 → XP_046780695.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  4. XM_046924735.1 → XP_046780691.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  5. XM_046924738.1 → XP_046780694.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  6. XM_046924741.1 → XP_046780697.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  7. XM_046924737.1 → XP_046780693.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  8. XM_046924733.1 → XP_046780689.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  9. XM_046924740.1 → XP_046780696.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  10. XM_046924742.1 → XP_046780698.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/Swiss-Prot
    Q50L44

  11. XM_046924731.1 → XP_046780687.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1

    UniProtKB/TrEMBL
    A9DA44

  12. XM_046924732.1 → XP_046780688.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A9DA44
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q50L44.1 GenPept UniProtKB/Swiss-Prot:Q50L44

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