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zgc:86598 zgc:86598 [ Danio rerio (zebrafish) ]

Gene ID: 415254, updated on 10-Oct-2019

Summary

Official Symbol
zgc:86598provided by ZNC
Official Full Name
zgc:86598provided by ZNC
Primary source
ZFIN:ZDB-GENE-040625-181
See related
Ensembl:ENSDARG00000014222
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
Also known as
ck2a1; im:6891713; si:ch211-133n4.5

Genomic context

See zgc:86598 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (3206268..3232710)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (3265370..3291812)
103 previous assembly Zv9 (GCF_000002035.4) 19 NC_007130.5 (3768797..3795239)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene starmaker Neighboring gene si:ch211-133n4.6 Neighboring gene si:ch211-133n4.4 Neighboring gene zgc:158445

Genomic regions, transcripts, and products

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
ATP binding IEA
Inferred from Electronic Annotation
more info
 
kinase activity IEA
Inferred from Electronic Annotation
more info
 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
protein kinase activity IEA
Inferred from Electronic Annotation
more info
 
protein serine/threonine kinase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
peptidyl-serine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
peptidyl-threonine phosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
phosphorylation IEA
Inferred from Electronic Annotation
more info
 
protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 
regulation of cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
protein kinase CK2 complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
casein kinase II alpha 1 subunit
Names
casein kinase 2 alpha 1
NP_001002164.1
XP_005159385.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002164.1NP_001002164.1  casein kinase II alpha 1 subunit

    See identical proteins and their annotated locations for NP_001002164.1

    Status: PROVISIONAL

    Source sequence(s)
    BC071303
    UniProtKB/TrEMBL
    Q6IQV0
    Related
    ENSDARP00000024748.9, ENSDART00000020344.10
    Conserved Domains (2) summary
    cd14132
    Location:20325
    STKc_CK2_alpha; Catalytic subunit (alpha) of the Serine/Threonine Kinase, Casein Kinase 2
    pfam00069
    Location:39324
    Pkinase; Protein kinase domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    3206268..3232710
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005159328.3XP_005159385.1  casein kinase II alpha 1 subunit isoform X1

    Conserved Domains (3) summary
    cd14132
    Location:20325
    STKc_CK2_alpha; Catalytic subunit (alpha) of the Serine/Threonine Kinase, Casein Kinase 2
    pfam00069
    Location:39324
    Pkinase; Protein kinase domain
    pfam11825
    Location:334379
    Nuc_recep-AF1; Nuclear/hormone receptor activator site AF-1
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