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rps13 ribosomal protein S13 [ Danio rerio (zebrafish) ]

Gene ID: 415169, updated on 13-Jun-2020

Summary

Official Symbol
rps13provided by ZNC
Official Full Name
ribosomal protein S13provided by ZNC
Primary source
ZFIN:ZDB-GENE-040625-52
See related
Ensembl:ENSDARG00000036298
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb14f11; fd13f08; fd60g01; zgc:91809; wu:fb14f11; wu:fd13f08; wu:fd60g01
Orthologs

Genomic context

See rps13 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (27041366..27044003)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (26770173..26772810)
103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (28167234..28169871)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene cell cycle associated protein 1a Neighboring gene nucleobindin 2a Neighboring gene pleckstrin homology domain containing, family A member 7b Neighboring gene SRY-box transcription factor 6

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
small ribosomal subunit rRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
40S ribosomal protein S13
NP_001002079.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001002079.1NP_001002079.1  40S ribosomal protein S13

    See identical proteins and their annotated locations for NP_001002079.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072552
    UniProtKB/TrEMBL
    Q6IMW6
    Related
    ENSDARP00000052729.3, ENSDART00000052730.6
    Conserved Domains (3) summary
    PTZ00072
    Location:4151
    PTZ00072; 40S ribosomal protein S13; Provisional
    cd00353
    Location:70145
    Ribosomal_S15p_S13e; Ribosomal protein S15 (prokaryotic)_S13 (eukaryotic) binds the central domain of 16S rRNA and is required for assembly of the small ribosomal subunit and for intersubunit association, thus representing a key element in the assembly of the whole ribosome. ...
    pfam08069
    Location:460
    Ribosomal_S13_N; Ribosomal S13/S15 N-terminal domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    27041366..27044003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394691.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    72671..75308
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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