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COL17A1 collagen type XVII alpha 1 chain [ Sus scrofa (pig) ]

Gene ID: 414914, updated on 4-Jul-2020

Summary

Official Symbol
COL17A1provided by VGNC
Official Full Name
collagen type XVII alpha 1 chainprovided by VGNC
Primary source
VGNC:VGNC:86868
See related
Ensembl:ENSSSCG00000010607
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Biased expression in ovary (RPKM 1.5), subcutaneous adipose (RPKM 1.3) and 4 other tissues See more
Orthologs
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Genomic context

See COL17A1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
57
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (114959404..115007734, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (124874698..124925355, complement)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial-like Neighboring gene STN1 subunit of CST complex Neighboring gene STE20 like kinase Neighboring gene cilia and flagella associated protein 43 Neighboring gene SWI5 dependent homologous recombination repair protein 1 Neighboring gene uncharacterized LOC100623931

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

General protein information

Preferred Names
collagen alpha-1(XVII) chain
Names
type XVII collagen

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    114959404..115007734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013983710.2XP_013839164.1  collagen alpha-1(XVII) chain

    UniProtKB/TrEMBL
    I3LUH8
    Related
    ENSSSCP00000027778.2, ENSSSCT00000023894.3
    Conserved Domains (1) summary
    pfam01391
    Location:760815
    Collagen; Collagen triple helix repeat (20 copies)
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