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LINC00587 long intergenic non-protein coding RNA 587 [ Homo sapiens (human) ]

Gene ID: 414319, updated on 10-Oct-2023

Summary

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Official Symbol
LINC00587provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 587provided by HGNC
Primary source
HGNC:HGNC:31372
See related
Ensembl:ENSG00000204250 AllianceGenome:HGNC:31372
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C9orf107; bA785H23.1
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Genomic context

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Location:
9q31.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (102519637..102657509)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (114693798..114831673)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (105281919..105419791)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376190 Neighboring gene CCSER2 pseudogene 1 Neighboring gene zyg-11 family member A, cell cycle regulator pseudogene 1 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:105629405-105630604 Neighboring gene phosphoribosyl pyrophosphate synthetase 2 pseudogene Neighboring gene MPRA-validated peak7310 silencer Neighboring gene cylicin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_103830.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL354701, AL442644
    Related
    ENST00000374801.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    102519637..102657509
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    114693798..114831673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B1AMM8.1 GenPept UniProtKB/Swiss-Prot:B1AMM8

Gene LinkOut

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Molecular Biology Databases