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LINC02913 long intergenic non-protein coding RNA 2913 [ Homo sapiens (human) ]

Gene ID: 414318, updated on 17-Jun-2024

Summary

Official Symbol
LINC02913provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2913provided by HGNC
Primary source
HGNC:HGNC:31370
See related
AllianceGenome:HGNC:31370
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C9orf106
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See LINC02913 in Genome Data Viewer
Location:
9q34.11
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (129321016..129322603)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (141523182..141524769)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (132083295..132084882)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132046985-132047958 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132047959-132048932 Neighboring gene long intergenic non-protein coding RNA 2975 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132049874-132050856 Neighboring gene uncharacterized LOC107987133 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_106889 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29110 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20371 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29111 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132083677-132084245 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132084246-132084813 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132086855-132087356 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:132096285-132097484 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132098075-132098878 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:132098879-132099682 Neighboring gene long intergenic non-protein coding RNA 1503 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132114579-132115380 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132115381-132116180 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:132120510-132121045 Neighboring gene uncharacterized LOC107987038

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_149714.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL161785

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    129321016..129322603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    141523182..141524769
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)