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AGAP12P ArfGAP with GTPase domain, ankyrin repeat and PH domain 12, pseudogene [ Homo sapiens (human) ]

Gene ID: 414224, updated on 23-Nov-2021

Summary

Official Symbol
AGAP12Pprovided by HGNC
Official Full Name
ArfGAP with GTPase domain, ankyrin repeat and PH domain 12, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:23661
See related
Ensembl:ENSG00000265018
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTGLF12P; PTPN20CP
Expression
Ubiquitous expression in testis (RPKM 13.7), skin (RPKM 12.3) and 25 other tissues See more
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Genomic context

See AGAP12P in Genome Data Viewer
Location:
10q11.22
Exon count:
8
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 10 NC_000010.11 (48010132..48031640, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (49218157..49239658, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene annexin A8 Neighboring gene neuropeptide Y receptor Y4-2 Neighboring gene family with sequence similarity 25 member C Neighboring gene RNA, 5S ribosomal pseudogene 315 Neighboring gene BMS1 pseudogene 7

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Other Names

  • centaurin, gamma-like family, member 12 pseudogene

Clone Names

  • FLJ14094, FLJ36015, DKFZp686H0133

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029396.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC245041
    Related
    ENST00000603888.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p13 Primary Assembly

    Range
    48010132..48031640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_021160001.1 Reference GRCh38.p13 PATCHES

    Range
    228414..249922 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_005804.3: Suppressed sequence

    Description
    NG_005804.3: This RefSeq was permanently suppressed because it is now thought that this locus is a transcribed pseudogene.
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