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Mir670hg MIR670 host gene (non-protein coding) [ Mus musculus (house mouse) ]

Gene ID: 414123, updated on 26-Sep-2022

Summary

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Official Symbol
Mir670hgprovided by MGI
Official Full Name
MIR670 host gene (non-protein coding)provided by MGI
Primary source
MGI:MGI:3041234
See related
AllianceGenome:MGI:3041234
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
E530001K10Rik
Summary
Orthologous to human MIR670HG (MIR670 host gene). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 1.4), cerebellum adult (RPKM 0.7) and 6 other tissues See more
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Genomic context

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See Mir670hg in Genome Data Viewer
Location:
2 E1; 2
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (93990981..94095446, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (94160636..94265103, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene alkB homolog 3, opposite strand 1 Neighboring gene alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase Neighboring gene hydroxysteroid (17-beta) dehydrogenase 12 Neighboring gene predicted gene, 39885 Neighboring gene microRNA 129-2 Neighboring gene microRNA 129b Neighboring gene microRNA 670 Neighboring gene tetratricopeptide repeat domain 17 Neighboring gene RIKEN cDNA 2810002D19 gene Neighboring gene inosine triphosphatase (nucleoside triphosphate pyrophosphatase) pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    93990981..94095446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001783418.3 RNA Sequence

  2. XR_003953878.2 RNA Sequence

  3. XR_001783417.3 RNA Sequence

  4. XR_003953876.2 RNA Sequence

  5. XR_003953879.2 RNA Sequence

  6. XR_003953877.2 RNA Sequence

  7. XR_866566.3 RNA Sequence

  8. XR_001783420.3 RNA Sequence

  9. XR_001783421.3 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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