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4930417H01Rik RIKEN cDNA 4930417H01 gene [ Mus musculus (house mouse) ]

Gene ID: 414106, updated on 25-Jan-2022

Summary

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Official Symbol
4930417H01Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930417H01 geneprovided by MGI
Primary source
MGI:MGI:3041209
See related
AllianceGenome:MGI:3041209
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in testis adult (RPKM 3.0) and large intestine adult (RPKM 0.1) See more
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Genomic context

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See 4930417H01Rik in Genome Data Viewer
Location:
2 E5; 2
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (122544752..122563376)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (122702639..122721456)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene expressed sequence AA467197 Neighboring gene microRNA 147 Neighboring gene solute carrier family 30 (zinc transporter), member 4 Neighboring gene biogenesis of lysosomal organelles complex-1, subunit 6, pallidin, opposite strand Neighboring gene biogenesis of lysosomal organelles complex-1, subunit 6, pallidin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    122544752..122563376
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_866683.4 RNA Sequence

  2. XR_866684.4 RNA Sequence

  3. XR_866685.3 RNA Sequence

  4. XR_866687.3 RNA Sequence

  5. XR_866688.4 RNA Sequence

  6. XR_866690.3 RNA Sequence

  7. XR_866686.4 RNA Sequence

  8. XR_866689.4 RNA Sequence

  9. XR_866691.4 RNA Sequence

  10. XR_004941049.1 RNA Sequence

  11. XR_004941050.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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