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CG11980 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41078, updated on 4-Apr-2024

Summary

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Official Symbol
CG11980provided by FlyBase
Primary source
FLYBASE:FBgn0037652
Locus tag
Dmel_CG11980
See related
AllianceGenome:FB:FBgn0037652
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-WO0118547.327; Dmel\CG11980
Summary
Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including adult head; embryonic/larval muscle system; extended germ band embryo; and gut section. Orthologous to human MYG1 (MYG1 exonuclease). [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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Location:
85C2-85C2; 3-48 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (9004017..9005331)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (4829739..4831053)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Proteasome beta3 subunit Neighboring gene Iruka Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Drosophila ventral furrow morphogenesis: a proteomic analysis. Gong L, et al. Development, 2004 Feb. PMID 14711877
  2. E(var)3-9 of Drosophila melanogaster encodes a zinc finger protein. Weiler KS. Genetics, 2007 Sep. PMID 17660546, Free PMC Article
  3. Building proteomic pathways using Drosophila ventral furrow formation as a model. Puri M, et al. Mol Biosyst, 2008 Nov. PMID 18931788
  4. Genomic profiling and expression studies reveal both positive and negative activities for the Drosophila Myb MuvB/dREAM complex in proliferating cells. Georlette D, et al. Genes Dev, 2007 Nov 15. PMID 17978103, Free PMC Article
  5. Proteomic Analysis of the Ubiquitin Landscape in the Drosophila Embryonic Nervous System and the Adult Photoreceptor Cells. Ramirez J, et al. PLoS One, 2015. PMID 26460970, Free PMC Article

See all (32) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG11980-PA
CG11980-PB
CG11980-PC

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    9004017..9005331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_141600.2 → NP_649857.1  uncharacterized protein Dmel_CG11980, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_649857.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8INP9, Q8MQQ5
    Related
    FBpp0081443
    Conserved Domains (1) summary
    pfam03690
    Location:28 → 352
    UPF0160; uncharacterized protein family (UPF0160)

  2. NM_169250.2 → NP_731302.1  uncharacterized protein Dmel_CG11980, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_731302.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8INP8, Q8MQQ5
    Related
    FBpp0081442
    Conserved Domains (1) summary
    pfam03690
    Location:27 → 351
    UPF0160; uncharacterized protein family (UPF0160)

  3. NM_169251.1 → NP_731303.2  uncharacterized protein Dmel_CG11980, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_731303.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8MQQ5, Q9VHI8
    Related
    FBpp0081444, FBtr0081964
    Conserved Domains (1) summary
    pfam03690
    Location:14 → 338
    UPF0160; uncharacterized protein family (UPF0160)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8INP8 Q8INP8
Q8INP9 Q8INP9
Q8MQQ5 Q8MQQ5
Q9VHI8 Q9VHI8

Gene LinkOut

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