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LOC410253 ataxin-2 homolog [ Apis mellifera (honey bee) ]

Gene ID: 410253, updated on 8-Jan-2019

Summary

Gene symbol
LOC410253
Gene description
ataxin-2 homolog
See related
BEEBASE:GB44976
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Hymenoptera; Apocrita; Aculeata; Apoidea; Apidae; Apis
Also known as
Vri

Genomic context

See LOC410253 in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
3
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG11 NC_037648.1 (13686610..13708311, complement)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG11 NC_007080.3 (11943279..11965010, complement)

Linkage Group LG11 - NC_037648.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102654161 Neighboring gene chitinase domain-containing protein 1 Neighboring gene ubiquitin carboxyl-terminal hydrolase calypso Neighboring gene uncharacterized LOC107965194 Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene uncharacterized LOC113219110

Genomic regions, transcripts, and products

Pathways from BioSystems

  • Circadian rhythm - fly, organism-specific biosystem (from KEGG)
    Circadian rhythm - fly, organism-specific biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In the fruit fly Drosophila melanogaster, seven genes ...

General protein information

Preferred Names
ataxin-2 homolog
Names
vrille

NCBI Reference Sequences (RefSeq)

RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037648.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    13686610..13708311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003250814.4XP_003250862.1  ataxin-2 homolog isoform X2

    UniProtKB/TrEMBL
    A0A088A183
    Conserved Domains (1) summary
    cd14694
    Location:132188
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
  2. XM_006566486.3XP_006566549.1  ataxin-2 homolog isoform X1

    See identical proteins and their annotated locations for XP_006566549.1

    Conserved Domains (1) summary
    cd14694
    Location:152208
    bZIP_NFIL3; Basic leucine zipper (bZIP) domain of Nuclear factor interleukin-3-regulated protein (NFIL3): a DNA-binding and dimerization domain
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