U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SLIRP2 SRA stem-loop interacting RNA binding protein 2 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 41021, updated on 5-Jan-2023

Summary

Official Symbol
SLIRP2provided by FlyBase
Official Full Name
SRA stem-loop interacting RNA binding protein 2provided by FlyBase
Primary source
FLYBASE:FBgn0037602
Locus tag
Dmel_CG8021
See related
AllianceGenome:FB:FBgn0037602
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
cg8021; CG8021; Dmel\CG8021; DmSLIRP2
Summary
Predicted to enable mRNA binding activity. Predicted to be active in nucleus. Orthologous to human SLIRP (SRA stem-loop interacting RNA binding protein). [provided by Alliance of Genome Resources, Apr 2022]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See SLIRP2 in Genome Data Viewer
Location:
85A5-85A5; 3-48 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.46 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (8651084..8651493)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (4476806..4477215)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene Cytochrome P450 313b1 Neighboring gene MAP kinase kinase 4 Neighboring gene Dihydroorotate dehydrogenase Neighboring gene Sys1 golgi trafficking protein Neighboring gene uncharacterized protein Neighboring gene belle

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables mRNA binding ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
SRA stem-loop interacting RNA binding protein 2
Names
CG8021-PA
SLIRP2-PA

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    8651084..8651493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_141551.2NP_649808.1  SRA stem-loop interacting RNA binding protein 2 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_649808.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B4HL43, B4QY06, Q9VHP3
    Related
    FBpp0081367, FBtr0081878
    Conserved Domains (1) summary
    cd12242
    Location:1183
    RRM_SLIRP; RNA recognition motif found in SRA stem-loop-interacting RNA-binding protein (SLIRP) and similar proteins